Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.4e-281 972.2 481 100.0
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 1.1e-172 610.5 430 68.1
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.9e-169 599.7 429 65.5
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 1.1e-167 594.0 427 66.0
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.4e-167 593.6 435 64.6
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.3e-167 592.8 435 65.1
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.5e-166 590.1 428 65.0
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 4.4e-166 588.6 435 64.4
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 9.9e-166 587.4 426 65.5
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 1.7e-165 586.6 428 65.0
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 1.7e-165 586.6 421 65.3
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 1.9e-164 583.2 428 65.0
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 2.4e-164 582.8 461 61.6
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 9.2e-164 580.9 417 66.4
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 3.5e-163 578.9 448 64.7
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 6.0e-163 578.2 431 62.9
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 1.0e-162 577.4 426 64.8
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 6.6e-162 574.7 430 63.0
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 8.6e-162 574.3 425 63.8
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 2.8e-160 569.3 412 64.8
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 2.4e-159 566.2 405 63.7
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 2.4e-159 566.2 432 62.0
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 4.0e-159 565.5 424 62.0
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.5e-158 563.5 428 62.1
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 2.6e-158 562.8 431 61.5
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 2.6e-158 562.8 462 60.8
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 4.4e-158 562.0 413 64.4
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.1e-156 557.4 429 61.1
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 1.4e-156 557.0 427 61.6
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 2.4e-156 556.2 429 61.3
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 1.6e-155 553.5 431 60.3
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 2.7e-155 552.7 414 62.1
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 2.7e-155 552.7 409 64.1
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 4.6e-155 552.0 429 61.5
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 6.0e-155 551.6 414 62.3
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 6.0e-155 551.6 426 60.6
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.7e-154 550.1 433 60.7
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 3.9e-154 548.9 445 59.8
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 5.1e-154 548.5 431 61.3
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 5.1e-154 548.5 408 62.0
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 6.6e-154 548.1 417 61.9
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.1e-153 547.4 423 61.7
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 1.1e-153 547.4 444 59.9
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.5e-153 547.0 422 60.2
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.5e-153 546.2 408 62.0
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.5e-153 546.2 408 61.8
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 3.3e-153 545.8 420 61.0
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 4.3e-153 545.4 428 59.8
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.3e-152 543.9 411 63.0
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.6e-152 543.5 421 61.0
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 4.8e-152 542.0 434 59.2
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 8.1e-152 541.2 423 60.3
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 3.1e-151 539.3 391 62.9
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 9.0e-151 537.7 408 61.8
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.6e-150 536.2 421 59.9
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.3e-149 533.9 419 60.4
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 3.8e-149 532.3 393 64.6
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.9e-148 530.0 410 61.7
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 3.2e-148 529.3 407 61.4
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 7.1e-148 528.1 409 61.1
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 9.3e-148 527.7 409 60.4
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 9.3e-148 527.7 407 61.2
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.6e-147 526.9 407 60.4
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 4.6e-147 525.4 412 59.5
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.7e-146 523.5 391 60.6
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 4.0e-143 512.3 406 60.8
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 3.4e-142 509.2 404 60.6
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 9.9e-142 507.7 441 56.5
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 4.9e-141 505.4 426 57.5
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 8.4e-141 504.6 388 60.8
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 7.1e-140 501.5 428 56.8
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.2e-139 500.7 460 54.1
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 4.6e-139 498.8 418 57.9
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 3.9e-138 495.7 400 60.2
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 8.7e-138 494.6 400 59.5
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 8.7e-138 494.6 400 58.5
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 1.9e-137 493.4 408 57.4
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 9.6e-137 491.1 458 55.7
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 3.7e-136 489.2 402 59.7
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 1.4e-135 487.3 402 59.2
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 7.9e-131 471.5 383 59.3
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 2.5e-129 466.5 349 59.3
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 6.3e-120 435.3 385 51.9
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 3.4e-118 429.5 407 50.4
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 5.5e-116 422.2 445 46.7
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.6e-115 420.6 288 67.4
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 4.3e-113 412.5 341 58.9
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 6.3e-112 408.7 292 65.8
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 9.1e-111 404.8 431 46.4
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 5.5e-108 395.6 296 62.8
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 7.4e-97 358.6 426 46.2
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 4.8e-96 355.9 289 60.6
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 4.8e-96 355.9 283 59.7
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 7.2e-92 342.0 353 48.7
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 4.7e-91 339.3 353 48.4
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.0e-89 334.0 264 62.1
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.7e-89 332.4 442 42.5
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 7.0e-87 325.5 240 62.5
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 1.0e-85 321.6 224 64.3
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 6.5e-85 318.9 413 41.9
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 1.2e-83 314.7 229 64.6
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 9.1e-79 298.5 247 59.9
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.3e-58 230.7 177 61.0
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 4.0e-58 229.9 327 38.5
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.0e-57 227.6 421 34.0
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 1.5e-52 211.5 176 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 7.8e-46 189.1 291 35.4
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 7.6e-41 172.6 137 59.9
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 2.7e-38 164.1 384 30.5
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 4.6e-38 163.3 103 75.7
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 4.0e-34 150.2 407 28.7
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 7.6e-33 146.0 133 51.9
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 6.4e-32 142.9 156 46.2
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.4e-31 141.0 104 65.4
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 7.1e-31 139.4 129 48.8
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 9.3e-31 139.0 118 53.4
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.4e-26 125.2 91 67.0
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 2.0e-25 121.3 130 43.8
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 1.9e-23 114.8 314 31.2
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 7.6e-17 92.8 65 70.8
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 3.8e-16 90.5 98 45.9
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.8e-13 81.6 62 56.5
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 1.5e-09 68.6 35 74.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.7e-08 65.1 51 58.8


User provided reference genes

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