Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 0.0e+00 1233.8 616 100.0
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.3e-210 736.9 596 60.9
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 2.4e-204 716.1 619 57.2
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.6e-203 712.6 596 59.2
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 4.4e-203 711.8 570 61.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 4.2e-201 705.3 599 57.8
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 4.6e-200 701.8 590 59.3
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.0e-199 700.7 589 59.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.0e-199 699.1 620 57.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 8.7e-199 697.6 616 57.6
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.4e-196 690.3 615 57.1
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.4e-195 685.6 600 56.7
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 9.9e-195 684.1 596 57.2
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.6e-189 666.8 596 56.2
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 5.3e-188 661.8 608 55.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.0e-187 659.8 615 55.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 2.6e-187 659.4 604 55.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.4e-187 659.1 595 54.1
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 9.9e-187 657.5 597 54.9
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 9.9e-187 657.5 595 54.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 9.9e-187 657.5 595 54.8
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.7e-186 656.8 597 53.9
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.2e-186 656.4 597 54.6
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.9e-186 656.0 599 53.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.8e-186 655.6 598 55.9
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.1e-185 654.1 603 53.9
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.2e-185 652.5 587 55.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.2e-185 652.1 605 53.1
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 5.5e-185 651.7 602 53.7
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 3.5e-184 649.0 599 55.9
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.8e-183 646.7 597 53.8
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.0e-183 646.0 608 53.3
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 5.6e-182 641.7 635 53.7
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 8.1e-181 637.9 597 53.1
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-180 637.5 599 55.4
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-180 636.3 599 55.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 3.1e-180 636.0 616 51.8
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 4.0e-180 635.6 598 53.2
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.0e-180 635.6 597 52.3
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.2e-179 634.0 600 52.8
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.5e-179 632.1 552 56.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 3.5e-176 622.5 599 54.3
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 2.3e-175 619.8 604 53.0
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.3e-174 615.9 604 52.3
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.7e-173 612.5 598 51.7
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 4.5e-171 605.5 603 52.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 8.5e-170 601.3 604 51.5
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.7e-168 596.3 601 51.4
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.0e-167 594.3 642 48.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.9e-166 590.1 603 51.1
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 7.4e-166 588.2 600 50.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.3e-165 587.4 601 51.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.6e-165 587.0 606 50.8
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.2e-165 586.6 610 50.3
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 3.7e-165 585.9 597 51.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 6.3e-165 585.1 721 45.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 8.2e-165 584.7 600 50.7
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.1e-164 582.8 600 50.5
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.2e-163 580.9 605 49.8
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.0e-162 577.8 602 50.5
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.4e-161 573.9 599 48.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 4.2e-161 572.4 600 48.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.1e-160 570.1 661 47.0
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.1e-160 570.1 599 50.3
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 6.1e-160 568.5 599 48.7
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.7e-157 560.5 607 47.0
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.2e-157 560.1 631 48.2
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 8.2e-157 558.1 487 56.9
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.4e-156 556.6 610 47.4
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.0e-155 553.5 601 45.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.3e-154 550.8 606 45.5
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.8e-154 549.3 602 46.7
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.5e-153 545.4 598 47.5
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 4.7e-152 542.3 599 47.1
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.0e-151 539.7 604 47.5
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-148 531.2 604 46.4
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.9e-147 525.4 595 46.9
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.2e-143 512.3 604 46.5
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.7e-141 507.3 604 45.4
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.6e-139 500.7 600 45.2
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.0e-139 500.4 455 56.7
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.0e-139 500.4 442 56.3
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 7.7e-139 498.4 613 46.8
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.9e-138 496.5 631 43.1
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.5e-137 494.2 618 46.1
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 3.4e-134 483.0 453 53.9
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.8e-133 479.9 545 47.0
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.4e-132 477.6 599 43.6
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.8e-127 458.4 475 49.3
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.8e-122 443.0 598 43.6
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.1e-111 406.8 542 41.9
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.8e-111 405.6 338 60.7
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.3e-106 390.6 547 39.1
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 7.5e-102 375.6 280 63.6
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.8e-99 365.5 601 36.3
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 4.9e-93 346.3 346 50.6
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 3.5e-91 340.1 525 36.4
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 4.6e-91 339.7 267 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.4e-84 318.2 416 40.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.3e-81 307.0 322 50.9
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 9.0e-79 298.9 276 53.3
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.0e-79 298.9 357 42.3
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.6e-75 288.1 297 50.2
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 9.3e-68 262.3 276 51.4
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 3.8e-53 213.8 223 50.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 6.5e-53 213.0 198 53.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.5e-52 211.1 208 53.8
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.6e-51 206.8 353 34.0
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.6e-46 191.0 522 29.9
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.5e-36 157.9 233 38.6
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-35 152.9 303 31.7
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-33 147.5 349 31.2
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 9.7e-33 146.0 160 47.5
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.7e-32 144.1 171 47.4
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.0e-30 138.3 133 52.6
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-30 138.3 196 36.7
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 4.5e-30 137.1 114 57.9
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-29 134.8 292 30.1
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-28 131.7 173 42.2
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 4.2e-28 130.6 87 65.5
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 4.2e-28 130.6 151 48.3
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.7e-26 123.2 234 32.9
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 3.7e-24 117.5 320 27.8
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 4.8e-24 117.1 57 100.0
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-23 115.5 345 29.0
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-21 107.8 281 28.5
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.9e-21 107.8 116 44.8
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-19 101.7 234 28.2
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-19 101.7 164 36.6
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 6.1e-19 100.1 363 26.2
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.0e-18 99.4 132 45.5
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.0e-18 97.4 148 34.5
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-17 95.9 143 37.8
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-17 94.0 87 50.6
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-17 93.6 87 51.7
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.5e-17 93.2 87 50.6
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.7e-16 90.9 225 30.2
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.2e-14 85.9 96 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.0e-14 85.1 175 30.9
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.7e-14 83.2 89 49.4
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 5.0e-13 80.5 75 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.5e-12 79.0 230 27.8
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.2e-12 76.6 87 47.1
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.6e-11 74.3 174 29.9
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.3e-10 71.6 93 40.9
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 4.0e-10 70.9 58 60.3
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-09 68.9 174 30.5
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 8.3e-08 63.2 46 54.3
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.1e-07 62.8 58 56.9
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-07 62.0 52 63.5
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.1e-07 60.8 45 64.4
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-06 58.9 56 46.4
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.5e-06 57.4 40 65.0
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 5.9e-06 57.0 33 75.8


User provided reference genes

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