Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 8.2e-98 360.5 200 100.0
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.0e-52 210.7 159 64.2
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.4e-49 199.5 159 62.3
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 3.1e-49 199.1 159 58.5
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.7e-48 196.1 160 56.2
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 7.7e-48 194.5 159 59.7
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 8.6e-47 191.0 159 59.7
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.1e-46 190.7 162 59.3
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.1e-46 190.7 155 59.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.5e-46 189.5 157 59.2
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 3.3e-46 189.1 160 54.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 4.2e-46 188.7 159 55.3
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.4e-44 183.7 159 55.3
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.8e-44 183.3 165 55.2
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 2.0e-43 179.9 161 57.8
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 2.6e-43 179.5 162 53.1
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 4.4e-43 178.7 158 52.5
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.7e-42 176.8 153 52.9
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.2e-42 176.4 159 56.6
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.2e-42 176.4 158 51.3
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.9e-42 175.3 153 51.0
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.4e-41 173.7 155 54.8
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.4e-41 173.7 155 51.6
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.4e-41 173.7 153 51.6
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.8e-41 173.3 159 49.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.8e-41 173.3 159 53.5
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.1e-41 172.6 158 49.4
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.1e-41 172.2 161 53.4
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.1e-41 172.2 153 49.7
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 4.1e-41 172.2 159 52.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.6e-40 170.2 157 52.9
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.6e-40 170.2 159 52.8
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.7e-40 169.5 159 51.6
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.5e-40 168.7 159 53.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.5e-40 168.7 157 49.7
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 5.9e-40 168.3 159 50.9
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 7.8e-40 167.9 158 52.5
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.3e-39 167.2 159 49.7
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.3e-39 167.2 161 47.8
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.7e-39 166.8 155 52.3
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.7e-39 166.8 159 48.4
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.8e-39 165.6 162 50.6
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 5.0e-39 165.2 155 52.3
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 5.0e-39 165.2 158 48.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 6.6e-39 164.9 161 48.4
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.1e-38 164.1 161 51.6
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.5e-38 163.7 158 50.0
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.5e-38 163.7 159 50.9
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.9e-38 163.3 161 49.1
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.3e-38 162.5 153 49.7
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.3e-38 162.5 157 49.7
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.3e-38 162.2 159 48.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 4.3e-38 162.2 155 49.0
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.6e-38 161.8 158 48.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 9.5e-38 161.0 166 46.4
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 9.5e-38 161.0 162 49.4
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.6e-37 160.2 162 48.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.8e-37 159.5 159 47.8
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.6e-37 159.1 162 48.8
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 3.6e-37 159.1 162 48.8
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 3.6e-37 159.1 160 51.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.0e-36 157.5 160 46.2
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.0e-36 157.5 162 47.5
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.0e-36 157.5 157 47.1
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.0e-36 157.5 159 47.2
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.8e-36 156.8 155 48.4
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 6.8e-36 154.8 159 49.7
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.2e-35 154.1 158 45.6
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.2e-35 154.1 159 51.6
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 2.6e-35 152.9 162 46.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 4.4e-35 152.1 158 45.6
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 9.8e-35 151.0 158 46.8
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.1e-33 147.5 195 40.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.8e-33 146.7 192 39.1
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.8e-33 146.7 160 48.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.0e-33 144.8 159 49.7
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 9.2e-33 144.4 158 45.6
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.2e-32 144.1 161 45.3
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.3e-31 140.6 190 42.1
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.0e-31 138.7 130 53.8
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.7e-29 132.1 157 41.4
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-27 126.3 162 41.4
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.4e-27 125.9 162 42.0
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 4.4e-27 125.6 158 38.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.2e-26 123.2 115 44.3
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.7e-24 116.3 57 100.0
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 6.6e-23 111.7 115 45.2
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.5e-22 110.5 159 37.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.2e-21 107.5 158 35.4
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.6e-21 107.1 171 38.6
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 3.6e-21 105.9 103 53.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.4e-20 104.0 166 36.7
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.5e-19 100.5 106 45.3
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 1.7e-18 97.1 65 64.6
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.4e-17 93.2 129 41.9
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 9.2e-17 91.3 97 48.5
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 9.5e-14 81.3 62 59.7
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.8e-12 77.0 87 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.2e-10 70.1 151 26.5
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.9e-09 67.0 84 39.3
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 7.1e-09 65.1 130 33.8
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 2.3e-07 60.1 156 30.8
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.6e-06 55.5 95 30.5


User provided reference genes

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