Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 8.6e-78 293.5 141 100.0
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 2.0e-26 122.9 279 33.7
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.1e-24 117.1 227 33.5
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 2.1e-23 112.8 220 33.6
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 7.9e-23 110.9 262 30.5
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.9e-22 108.6 286 30.1
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 5.1e-22 108.2 286 29.0
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 5.1e-22 108.2 286 29.0
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.1e-22 108.2 286 30.1
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 6.7e-22 107.8 279 30.1
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.1e-21 107.1 281 29.5
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.1e-21 107.1 280 29.3
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.5e-21 106.7 279 29.7
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.3e-21 105.5 276 29.3
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 4.4e-21 105.1 286 30.1
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 5.7e-21 104.8 289 28.0
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 5.7e-21 104.8 277 29.6
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 7.4e-21 104.4 281 29.9
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 7.4e-21 104.4 280 29.3
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-20 103.6 275 29.1
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.3e-20 103.6 286 29.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.3e-20 103.6 286 28.3
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.7e-20 103.2 286 28.3
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.2e-20 102.8 281 27.8
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 2.2e-20 102.8 279 28.7
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.2e-20 102.8 275 29.1
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.8e-20 102.4 286 28.0
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 4.8e-20 101.7 286 28.0
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.8e-20 101.7 286 28.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 4.8e-20 101.7 286 28.7
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 6.3e-20 101.3 286 28.0
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 8.2e-20 100.9 279 28.3
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.4e-19 100.1 286 29.0
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.4e-19 100.1 280 28.2
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.4e-19 100.1 278 28.8
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.4e-19 100.1 278 27.7
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.8e-19 99.8 286 28.7
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.8e-19 99.8 281 29.2
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.4e-19 99.4 288 28.1
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.4e-19 99.4 286 27.3
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 3.1e-19 99.0 281 28.5
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 3.1e-19 99.0 281 28.5
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.1e-19 99.0 286 27.6
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 4.1e-19 98.6 288 27.4
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.3e-19 98.2 279 27.2
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 5.3e-19 98.2 286 29.0
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 5.3e-19 98.2 281 27.8
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 6.9e-19 97.8 285 26.7
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 9.1e-19 97.4 281 27.4
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 9.1e-19 97.4 286 28.3
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.2e-18 97.1 286 27.6
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.2e-18 97.1 279 29.0
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.2e-18 97.1 286 26.6
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 1.5e-18 96.7 286 27.6
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 3.4e-18 95.5 286 26.9
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.5e-18 95.1 286 28.0
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.5e-18 95.1 286 26.2
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 4.5e-18 95.1 286 27.6
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.9e-18 94.7 286 28.0
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.9e-18 94.7 290 27.9
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 5.9e-18 94.7 281 28.5
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 5.9e-18 94.7 281 27.4
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 5.9e-18 94.7 281 27.4
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 7.7e-18 94.4 286 28.0
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.7e-18 94.4 286 28.0
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.0e-17 94.0 279 26.5
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.0e-17 94.0 275 27.6
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.0e-17 94.0 279 26.9
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.0e-17 94.0 286 28.3
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 1.3e-17 93.6 281 27.4
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.2e-17 92.8 286 27.3
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.2e-17 92.8 281 26.7
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 2.2e-17 92.8 70 62.9
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 2.2e-17 92.8 279 27.2
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 2.9e-17 92.4 279 26.9
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 3.8e-17 92.0 286 26.2
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 6.5e-17 91.3 281 27.0
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 8.5e-17 90.9 281 26.7
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 8.5e-17 90.9 281 26.0
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.1e-16 90.5 68 63.2
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.1e-16 90.5 282 27.7
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.1e-16 90.5 282 27.7
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.4e-16 90.1 279 27.6
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.4e-16 90.1 290 26.2
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.9e-16 89.7 279 25.8
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 3.2e-16 89.0 279 25.4
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 3.2e-16 89.0 281 27.8
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 5.5e-16 88.2 278 26.6
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 7.2e-16 87.8 287 25.4
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 9.4e-16 87.4 75 53.3
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.6e-15 86.7 75 52.0
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 1.6e-15 86.7 88 51.1
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.1e-15 86.3 282 24.8
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 2.1e-15 86.3 282 25.2
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.1e-15 86.3 282 26.6
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.7e-15 85.9 252 27.0
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.6e-15 85.5 75 56.0
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 4.7e-15 85.1 279 26.9
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 6.1e-15 84.7 48 75.0
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 6.1e-15 84.7 75 54.7
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 7.9e-15 84.3 279 26.2
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.9e-15 84.3 280 25.7
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 7.9e-15 84.3 48 79.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.0e-14 84.0 48 75.0
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.0e-14 84.0 75 50.7
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 2.3e-14 82.8 267 27.3
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 2.3e-14 82.8 48 77.1
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.3e-14 82.8 75 54.7
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.3e-14 82.8 49 75.5
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 5.2e-14 81.6 277 26.0
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 5.2e-14 81.6 48 72.9
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 5.2e-14 81.6 315 23.2
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 6.7e-14 81.3 75 52.0
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 8.8e-14 80.9 75 50.7
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 1.5e-13 80.1 267 26.6
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.5e-13 80.1 47 74.5
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.0e-13 79.7 279 24.4
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 2.0e-13 79.7 48 66.7
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.0e-13 79.7 75 53.3
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 3.3e-13 79.0 275 25.5
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.3e-13 79.0 282 25.2
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 3.3e-13 79.0 61 55.7
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.3e-13 79.0 279 25.1
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.4e-13 78.6 276 23.2
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 7.4e-13 77.8 276 25.0
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 2.2e-12 76.3 279 23.3
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 2.2e-12 76.3 279 23.3
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.2e-12 76.3 279 23.3
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.2e-12 76.3 48 66.7
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.2e-12 76.3 48 70.8
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.2e-12 76.3 68 50.0
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 4.8e-12 75.1 279 24.4
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 6.3e-12 74.7 48 66.7
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 6.3e-12 74.7 279 22.9
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.1e-11 73.9 286 23.4
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.1e-11 73.9 48 68.8
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.4e-11 73.6 47 68.1
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 9.1e-11 70.9 46 65.2
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.6e-10 70.1 48 66.7
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.0e-10 69.7 46 63.0
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 2.5e-08 62.8 68 41.2
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 7.2e-08 61.2 45 57.8
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 3.6e-07 58.9 44 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 4.7e-07 58.5 94 37.2
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 6.1e-07 58.2 45 53.3
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 6.1e-07 58.2 45 53.3
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.0e-06 57.4 59 45.8
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.4e-06 57.0 43 53.5
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 8.8e-06 54.3 43 48.8


User provided reference genes

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