Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 0.0e+00 1241.1 626 100.0
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 2.0e-182 643.3 572 58.4
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 4.7e-176 622.1 630 52.5
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 6.1e-176 621.7 558 58.2
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 8.9e-175 617.8 588 56.5
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 2.2e-173 613.2 602 54.2
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 1.1e-172 610.9 623 52.2
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 2.7e-171 606.3 567 54.1
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 4.6e-171 605.5 627 52.2
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 1.7e-170 603.6 567 54.7
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 3.0e-170 602.8 565 55.0
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 1.1e-169 600.9 628 52.1
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 2.1e-168 596.7 608 52.6
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 2.3e-167 593.2 628 50.6
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 2.6e-166 589.7 593 54.6
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 3.4e-166 589.3 566 53.7
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 5.8e-166 588.6 629 50.7
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 1.6e-163 580.5 612 51.5
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 2.7e-163 579.7 573 54.8
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 1.0e-162 577.8 572 53.3
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 3.0e-162 576.2 613 51.2
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 3.9e-162 575.9 613 51.4
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 5.0e-162 575.5 611 51.9
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 1.5e-161 573.9 631 50.4
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 3.6e-160 569.3 635 51.0
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 1.8e-159 567.0 616 51.0
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 3.1e-159 566.2 634 50.5
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 7.5e-158 561.6 637 49.0
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 2.2e-157 560.1 576 51.7
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 4.1e-156 555.8 651 49.2
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 4.1e-156 555.8 571 52.2
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 3.5e-155 552.7 570 53.0
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 1.7e-154 550.4 566 52.1
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 1.5e-153 547.4 585 49.9
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 1.6e-152 543.9 631 48.5
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 6.2e-152 542.0 567 50.3
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 6.2e-152 542.0 625 48.5
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.4e-151 540.8 622 48.9
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 2.3e-151 540.0 602 47.5
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 5.2e-151 538.9 566 49.5
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 8.9e-151 538.1 635 47.6
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 2.0e-150 537.0 603 47.4
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 4.4e-150 535.8 629 47.5
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 5.8e-150 535.4 567 49.0
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 9.9e-150 534.6 567 50.6
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 2.2e-149 533.5 604 47.4
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 2.2e-149 533.5 648 47.2
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 2.9e-149 533.1 604 47.4
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 2.9e-149 533.1 604 47.5
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 1.4e-148 530.8 604 47.2
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.4e-148 530.8 567 48.9
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 1.4e-148 530.8 606 48.8
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 3.2e-148 529.6 624 45.7
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 9.2e-148 528.1 567 50.1
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.2e-147 527.7 568 49.8
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 4.6e-147 525.8 588 49.7
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 6.0e-147 525.4 625 46.1
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 7.8e-147 525.0 631 46.1
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 1.3e-146 524.2 608 48.8
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 3.9e-146 522.7 590 49.3
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 6.6e-146 521.9 615 47.2
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 6.6e-146 521.9 610 47.7
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.1e-145 521.2 591 48.2
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 2.5e-145 520.0 608 46.1
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 2.8e-144 516.5 452 58.2
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.1e-143 514.6 566 50.0
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 2.4e-143 513.5 615 47.5
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 2.6e-142 510.0 631 45.5
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 1.4e-140 504.2 609 45.8
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 4.2e-140 502.7 688 43.2
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 3.0e-138 496.5 687 42.5
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 1.9e-137 493.8 567 47.8
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 6.9e-135 485.3 567 47.4
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 1.2e-134 484.6 661 42.2
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 9.9e-134 481.5 546 48.4
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 4.2e-132 476.1 612 44.4
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 3.3e-129 466.5 573 46.1
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 5.3e-127 459.1 570 46.5
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 4.5e-126 456.1 593 45.2
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 8.2e-120 435.3 655 42.9
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.5e-118 431.0 394 59.9
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 4.6e-115 419.5 608 41.8
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 4.6e-115 419.5 423 50.1
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 3.0e-114 416.8 609 41.7
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 8.2e-112 408.7 431 51.5
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 8.2e-112 408.7 458 50.0
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 4.1e-111 406.4 460 48.5
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 3.4e-110 403.3 492 46.7
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.9e-110 402.5 417 49.2
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.5e-105 387.9 415 52.0
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 1.4e-103 381.3 408 50.0
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 2.6e-102 377.1 637 40.0
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.0e-101 375.2 387 52.7
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 1.7e-101 374.4 567 41.4
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 9.4e-100 368.6 387 53.0
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.2e-94 351.7 418 45.5
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 2.9e-93 347.1 597 38.2
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 3.8e-93 346.7 403 48.6
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 1.5e-89 334.7 414 46.4
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.5e-84 318.2 639 36.0
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 5.2e-82 309.7 577 36.2
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 8.0e-67 259.2 579 30.1
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 1.4e-66 258.5 290 50.0
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.1e-50 204.1 233 47.6
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 1.6e-43 181.8 215 47.0
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.8e-42 178.3 271 40.6
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 8.3e-40 169.5 223 39.0
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 7.1e-39 166.4 198 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 2.7e-38 164.5 617 26.3
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 2.4e-31 141.4 296 33.8
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 2.7e-30 137.9 162 46.3
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 3.0e-29 134.4 204 36.3
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 6.2e-19 100.1 355 28.7
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 2.0e-17 95.1 84 60.7
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 1.6e-14 85.5 174 36.2
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 1.0e-13 82.8 93 50.5
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 7.4e-12 76.6 77 53.2
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 6.2e-11 73.6 67 53.7
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 6.2e-11 73.6 73 53.4
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 1.6e-06 58.9 46 52.2


User provided reference genes

Program Settings