Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-56 223.0 116 100.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 2.5e-43 178.7 109 81.7
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 2.4e-41 172.2 112 82.1
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.1e-41 171.8 109 76.1
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 4.1e-41 171.4 108 80.6
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 6.9e-41 170.6 112 76.8
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.2e-40 169.9 109 77.1
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.6e-40 168.7 109 78.9
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 2.6e-40 168.7 111 77.5
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 3.4e-40 168.3 109 76.1
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.4e-40 168.3 116 77.6
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.3e-39 166.4 109 76.1
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 2.2e-39 165.6 109 77.1
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.9e-39 165.2 109 77.1
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 3.8e-39 164.9 109 78.0
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 6.5e-39 164.1 109 78.0
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 8.5e-39 163.7 109 73.4
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 8.5e-39 163.7 109 75.2
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-38 163.3 109 73.4
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.4e-38 162.9 109 75.2
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.4e-38 162.9 109 78.9
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.4e-38 162.9 109 78.9
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.9e-38 162.5 109 73.4
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 2.5e-38 162.2 109 71.6
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 2.5e-38 162.2 109 78.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.5e-38 162.2 109 74.3
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 3.2e-38 161.8 111 74.8
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.2e-38 161.8 109 74.3
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 5.5e-38 161.0 109 72.5
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 7.2e-38 160.6 109 74.3
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 9.4e-38 160.2 97 81.4
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 9.4e-38 160.2 109 75.2
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 9.4e-38 160.2 109 75.2
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.1e-37 159.1 109 75.2
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.1e-37 159.1 115 67.0
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.1e-37 159.1 109 75.2
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.7e-37 158.7 109 76.1
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 2.7e-37 158.7 103 72.8
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 4.7e-37 157.9 109 73.4
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 6.1e-37 157.5 112 76.8
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 6.1e-37 157.5 110 72.7
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 7.9e-37 157.1 111 71.2
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 7.9e-37 157.1 109 75.2
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.0e-36 156.8 115 72.2
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.0e-36 156.8 109 72.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.4e-36 156.4 109 76.1
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.8e-36 156.0 109 71.6
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.8e-36 156.0 109 71.6
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.8e-36 156.0 115 71.3
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.8e-36 156.0 109 71.6
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.3e-36 155.6 115 71.3
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 2.3e-36 155.6 105 74.3
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 3.0e-36 155.2 109 69.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.0e-36 155.2 111 73.9
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 3.9e-36 154.8 110 72.7
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.9e-36 154.8 91 80.2
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 5.1e-36 154.5 109 71.6
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 5.1e-36 154.5 111 70.3
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 5.1e-36 154.5 105 75.2
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 6.7e-36 154.1 109 76.1
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 8.8e-36 153.7 109 72.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.1e-35 153.3 109 68.8
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.1e-35 153.3 110 72.7
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.1e-35 153.3 110 78.2
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.1e-35 153.3 109 72.5
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.5e-35 152.9 110 72.7
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.0e-35 152.5 97 78.4
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.0e-35 152.5 111 69.4
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 2.6e-35 152.1 111 68.5
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 2.6e-35 152.1 110 69.1
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 3.3e-35 151.8 110 70.9
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 3.3e-35 151.8 109 70.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 4.4e-35 151.4 110 71.8
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 4.4e-35 151.4 109 74.3
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 4.4e-35 151.4 110 73.6
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.4e-35 151.4 109 71.6
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.7e-35 151.0 111 72.1
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 7.4e-35 150.6 109 70.6
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 7.4e-35 150.6 109 70.6
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 7.4e-35 150.6 109 68.8
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 7.4e-35 150.6 109 72.5
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 9.7e-35 150.2 110 71.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.7e-34 149.4 113 70.8
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.7e-34 149.4 113 70.8
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.7e-34 149.4 113 70.8
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.7e-34 149.4 109 72.5
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.2e-34 149.1 112 71.4
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 2.2e-34 149.1 109 67.9
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.8e-34 148.7 109 70.6
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.8e-34 148.7 79 87.3
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 3.7e-34 148.3 110 71.8
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.8e-34 147.9 108 73.1
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 6.3e-34 147.5 109 69.7
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 8.2e-34 147.1 110 75.5
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 1.1e-33 146.7 117 68.4
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.1e-33 146.7 111 70.3
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.1e-33 146.7 110 70.0
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.4e-33 146.4 111 69.4
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.4e-33 146.4 111 69.4
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.4e-33 146.4 98 77.6
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.8e-33 146.0 112 71.4
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 3.1e-33 145.2 113 72.6
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.1e-33 145.2 130 58.5
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 5.3e-33 144.4 110 73.6
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 7.0e-33 144.1 101 73.3
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 9.1e-33 143.7 101 72.3
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 9.1e-33 143.7 101 72.3
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.0e-32 142.5 110 70.9
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.0e-32 142.5 112 69.6
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.0e-32 142.5 112 69.6
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 2.0e-32 142.5 112 69.6
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 2.6e-32 142.1 109 67.9
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 3.5e-32 141.7 111 68.5
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 7.7e-32 140.6 110 67.3
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.0e-31 140.2 111 66.7
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 1.3e-31 139.8 109 67.0
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.7e-31 139.4 75 86.7
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.7e-31 139.4 112 64.3
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.2e-31 139.0 109 67.9
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 2.2e-31 139.0 75 84.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 2.2e-31 139.0 113 61.9
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 3.8e-31 138.3 135 56.3
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 5.0e-31 137.9 185 45.9
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 5.0e-31 137.9 113 61.1
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.9e-30 136.0 140 55.7
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 5.5e-30 134.4 112 63.4
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.2e-28 127.9 75 80.0
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 1.9e-22 109.4 57 89.5
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 7.2e-22 107.5 109 52.3
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 7.2e-22 107.5 57 87.7
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.6e-21 106.3 54 90.7
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 2.1e-21 105.9 55 87.3
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 6.1e-21 104.4 73 67.1
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 6.1e-21 104.4 89 55.1
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 5.0e-15 84.7 77 54.5
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.1e-14 83.6 110 51.8
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 6.8e-12 74.3 54 61.1
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 8.8e-12 73.9 49 73.5
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 8.8e-12 73.9 80 46.2
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 7.0e-09 64.3 52 61.5
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.2e-08 63.5 59 54.2
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.6e-08 63.2 61 50.8
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 5.9e-08 61.2 67 52.2
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 7.7e-08 60.8 54 51.9
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 1.7e-07 59.7 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.7e-07 59.7 43 69.8
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 6.6e-07 57.8 55 60.0
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 1.1e-06 57.0 29 86.2
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 5.5e-06 54.7 58 51.7
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 7.2e-06 54.3 28 89.3


User provided reference genes

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