Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07590 Coffea canephora HOM05D004083 ORTHO05D005029 2.0e-227 792.3 478 100.0
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 1.6e-104 384.0 478 56.5
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 7.9e-99 365.2 477 53.5
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 1.3e-96 357.8 482 52.1
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 2.4e-95 353.6 474 54.0
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 2.9e-93 346.7 475 51.4
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 1.9e-92 344.0 489 52.6
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 2.5e-92 343.6 490 51.4
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 4.6e-91 339.3 474 57.4
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 7.9e-91 338.6 485 51.5
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 5.7e-89 332.4 480 50.4
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.3e-88 331.3 474 56.5
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 7.7e-86 322.0 496 50.0
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 1.3e-85 321.2 487 47.6
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 2.5e-84 317.0 499 50.7
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 1.2e-83 314.7 478 49.6
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 3.7e-80 303.1 481 48.6
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 1.1e-79 301.6 479 49.3
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 9.1e-79 298.5 478 48.1
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 2.0e-78 297.4 475 47.6
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 4.5e-78 296.2 478 48.3
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 1.3e-77 294.7 501 46.9
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 1.2e-75 288.1 477 47.6
SalBow7G3022 Salvia bowleyana HOM05D004083 ORTHO05D005029 2.7e-75 287.0 446 51.3
Nitab4.5_0012564g0020 Nicotiana tabacum HOM05D004083 ORTHO05D005029 6.1e-75 285.8 493 48.3
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 1.0e-74 285.0 487 47.8
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 5.2e-74 282.7 487 52.8
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 5.7e-73 279.3 480 48.8
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 2.2e-72 277.3 486 45.3
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 4.8e-72 276.2 429 50.8
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 4.8e-72 276.2 491 46.0
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 6.3e-72 275.8 483 45.1
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 6.3e-72 275.8 473 46.1
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 4.1e-71 273.1 485 47.8
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 5.3e-71 272.7 478 49.0
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 2.0e-70 270.8 487 43.1
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 3.2e-68 263.5 525 42.1
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 5.5e-68 262.7 471 47.1
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 9.4e-68 261.9 479 47.2
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 4.7e-67 259.6 555 41.8
SalBow2G0571 Salvia bowleyana HOM05D004083 ORTHO05D005029 8.0e-67 258.8 463 45.4
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 1.4e-66 258.1 479 44.9
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 4.4e-65 253.1 493 45.2
ECA232G3573 Erigeron canadensis HOM05D004083 ORTHO05D005029 1.7e-64 251.1 484 41.7
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 4.8e-64 249.6 500 40.0
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 4.8e-64 249.6 490 47.1
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 4.8e-64 249.6 479 46.1
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 7.0e-63 245.7 527 41.2
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 7.0e-63 245.7 490 43.3
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 1.6e-62 244.6 469 43.1
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 2.2e-61 240.7 492 39.2
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 2.2e-61 240.7 508 46.5
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 8.5e-61 238.8 510 42.9
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 1.1e-60 238.4 502 39.0
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 2.5e-60 237.3 483 41.6
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 3.2e-60 236.9 472 44.3
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 4.2e-60 236.5 487 41.7
MELO3C017222.2 Cucumis melo HOM05D004083 ORTHO05D005029 9.5e-60 235.3 454 42.1
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 2.8e-59 233.8 474 43.0
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 4.7e-59 233.0 495 39.0
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 6.1e-59 232.6 516 41.9
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 8.0e-59 232.3 511 42.9
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 8.0e-59 232.3 475 42.9
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 1.0e-58 231.9 479 45.1
HPP92_009477 Vanilla planifolia HOM05D004083 ORTHO05D005029 8.8e-58 228.8 471 38.9
DCAR_023173 Daucus carota HOM05D004083 ORTHO05D005029 1.5e-57 228.0 465 44.5
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 4.4e-57 226.5 500 38.8
Nitab4.5_0001485g0130 Nicotiana tabacum HOM05D004083 ORTHO05D005029 8.3e-56 222.2 454 46.7
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 1.1e-55 221.9 506 42.9
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 9.2e-55 218.8 505 38.2
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 2.9e-53 213.8 496 39.1
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 1.5e-52 211.5 501 39.7
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 1.9e-52 211.1 524 39.3
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 7.3e-52 209.1 484 39.3
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 1.6e-51 208.0 484 39.3
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 2.8e-51 207.2 519 38.5
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.8e-51 207.2 499 41.1
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 3.6e-51 206.8 470 41.7
Cfa019327 Carpinus fangiana HOM05D004083 ORTHO05D005029 2.3e-50 204.1 519 41.2
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 3.0e-50 203.8 495 41.6
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 4.0e-50 203.4 485 40.2
unitig_748.g8703 Utricularia gibba HOM05D004083 ORTHO05D005029 5.7e-49 199.5 469 43.9
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 9.8e-49 198.7 509 39.7
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 2.2e-48 197.6 495 41.4
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 2.9e-48 197.2 487 40.7
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 1.1e-47 195.3 481 40.1
Cpa.g.sc94.53 Carica papaya HOM05D004083 ORTHO05D005029 3.2e-47 193.7 253 55.3
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 7.0e-47 192.6 513 38.0
SEGI_38744 Sequoiadendron giganteum HOM05D004083 ORTHO05D005029 2.3e-45 187.6 535 33.5
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 1.1e-44 185.3 503 39.6
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 1.2e-43 181.8 518 37.5
FAN18G2285 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.1e-42 177.2 486 40.3
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 5.2e-42 176.4 493 39.6
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 3.4e-41 173.7 461 39.0
Lsat_1_v5_gn_4_111021 Lactuca sativa HOM05D004083 ORTHO05D005029 3.4e-41 173.7 442 41.2
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 1.3e-40 171.8 513 33.9
BcaC08g46857 Brassica carinata HOM05D004083 ORTHO05D005029 3.2e-39 167.2 443 37.2
BraA07t30587Z Brassica rapa HOM05D004083 ORTHO05D005029 4.6e-38 163.3 477 34.2
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 6.0e-38 162.9 483 32.1
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 6.0e-38 162.9 483 32.1
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 3.9e-37 160.2 497 38.2
Thecc.03G101200 Theobroma cacao HOM05D004083 ORTHO05D005029 3.9e-37 160.2 321 38.9
Lalb_Chr12g0197191 Lupinus albus HOM05D004083 ORTHO05D005029 5.0e-37 159.8 183 66.1
A07p29490 Brassica napus HOM05D004083 ORTHO05D005029 6.6e-37 159.5 478 33.9
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 8.6e-37 159.1 471 37.8
BcaC08g45598 Brassica carinata HOM05D004083 ORTHO05D005029 1.1e-36 158.7 484 32.0
Zm00001eb409280 Zea mays HOM05D004083 ORTHO05D005029 2.1e-35 154.5 465 37.0
Os12g0502700 Oryza sativa ssp. japonica HOM05D004083 ORTHO05D005029 3.1e-34 150.6 474 38.0
PGSC0003DMG400024540 Solanum tuberosum HOM05D004083 ORTHO05D005029 1.2e-33 148.7 176 49.4
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 9.8e-33 145.6 483 34.0
Sopen03g034190 Solanum pennellii HOM05D004083 ORTHO05D005029 1.3e-32 145.2 195 51.3
Solyc03g115120.1 Solanum lycopersicum HOM05D004083 ORTHO05D005029 8.3e-32 142.5 187 51.3
Zm00001eb409390 Zea mays HOM05D004083 ORTHO05D005029 5.4e-31 139.8 247 47.4
Zm00001eb409350 Zea mays HOM05D004083 ORTHO05D005029 4.6e-30 136.7 240 47.5
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 2.5e-28 131.0 212 38.7
Actinidia05940 Actinidia chinensis HOM05D004083 ORTHO05D005029 4.3e-28 130.2 87 73.6
Zm00001eb409300 Zea mays HOM05D004083 ORTHO05D005029 3.6e-27 127.1 321 39.6
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 2.3e-26 124.4 376 35.4
CBR_g40972 Chara braunii HOM05D004083 ORTHO05D005029 1.2e-25 122.1 232 34.9
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis HOM05D004083 ORTHO05D005029 4.9e-24 116.7 232 37.9
COL.COLO4_06863 Corchorus olitorius HOM05D004083 ORTHO05D005029 1.4e-23 115.2 212 38.7
GSVIVG01033228001 Vitis vinifera HOM05D004083 ORTHO05D005029 5.4e-23 113.2 283 36.4
Pp3c5_3270 Physcomitrium patens HOM05D004083 ORTHO05D005029 2.7e-22 110.9 578 32.7
Mapoly0088s0065 Marchantia polymorpha HOM05D004083 ORTHO05D005029 2.3e-21 107.8 625 26.4
MCO13G099 Micromonas commoda HOM05D004083 ORTHO05D005029 2.1e-19 101.3 190 34.7
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 4.7e-19 100.1 230 43.9
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 7.6e-17 92.8 510 26.7
FvH4_5g13880 Fragaria vesca HOM05D004083 ORTHO05D005029 9.9e-17 92.4 222 37.8
Cpa.g.sc94.52 Carica papaya HOM05D004083 ORTHO05D005029 4.9e-16 90.1 215 34.9
Actinidia16125 Actinidia chinensis HOM05D004083 ORTHO05D005029 1.1e-15 89.0 110 53.6
Cre05.g240650 Chlamydomonas reinhardtii HOM05D004083 ORTHO05D005029 1.9e-15 88.2 179 50.8
PRCOL_00006068 Prasinoderma coloniale HOM05D004083 ORTHO05D005029 9.3e-15 85.9 186 47.3
RcHm_v2.0_Chr7g0200511 Rosa chinensis HOM05D004083 ORTHO05D005029 1.6e-14 85.1 183 43.7
FvH4_5g00881 Fragaria vesca HOM05D004083 ORTHO05D005029 9.6e-12 75.9 337 31.2
FAN18G2457 Fragaria x ananassa HOM05D004083 ORTHO05D005029 9.6e-12 75.9 338 31.4
RcHm_v2.0_Chr7g0183051 Rosa chinensis HOM05D004083 ORTHO05D005029 1.6e-11 75.1 396 31.8
RcHm_v2.0_Chr7g0200711 Rosa chinensis HOM05D004083 ORTHO05D005029 1.6e-11 75.1 358 34.9
FAN04G0828 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.8e-11 74.3 365 33.4
FAN24G2149 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.1e-10 72.4 78 46.2
FAN13G1062 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.1e-10 70.9 231 39.8
FvH4_4g18280 Fragaria vesca HOM05D004083 ORTHO05D005029 6.9e-10 69.7 317 34.7
FAN12G2651 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.0e-09 68.2 316 33.9
Zm00001eb409320 Zea mays HOM05D004083 ORTHO05D005029 9.9e-09 65.9 42 78.6
Cfa025727 Carpinus fangiana HOM05D004083 ORTHO05D005029 1.7e-08 65.1 207 30.9
ATR0064G035 Amborella trichopoda HOM05D004083 ORTHO05D005029 6.4e-08 63.2 92 41.3
GSVIVG01033230001 Vitis vinifera HOM05D004083 ORTHO05D045370 8.4e-08 62.8 43 65.1
Phvul.002G053800 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 1.4e-07 62.0 58 56.9
Hma1.2p1_0456F.1_g156540 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 2.1e-06 58.2 104 39.4
EL10Ac1g01198 Beta vulgaris HOM05D002285 ORTHO05D004192 3.5e-06 57.4 74 39.2
EL10Ac1g01199 Beta vulgaris HOM05D002285 ORTHO05D004192 3.5e-06 57.4 74 39.2
SHI32030 Sapria himalayana HOM05D004083 ORTHO05D005029 3.5e-06 57.4 418 29.4
AagrBONN_evm.TU.Sc2ySwM_228.101 Anthoceros agrestis HOM05D002285 ORTHO05D004192 6.0e-06 56.6 70 40.0
THA.LOC104816587 Tarenaya hassleriana HOM05D002285 ORTHO05D004192 6.0e-06 56.6 71 40.8
ECA240G2921 Erigeron canadensis HOM05D002285 ORTHO05D004192 7.9e-06 56.2 74 41.9


User provided reference genes

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