Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-15 84.7 42 100.0
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-15 84.7 42 100.0
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 4.8e-08 60.1 42 78.6
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 6.2e-08 59.7 42 78.6
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.1e-07 58.9 42 76.2
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.1e-07 58.9 40 80.0
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.1e-07 58.9 40 80.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-07 58.2 42 78.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.8e-07 58.2 40 77.5
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.8e-07 58.2 40 77.5
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.8e-07 58.2 40 80.0
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.8e-07 58.2 40 77.5
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.4e-07 57.8 40 77.5
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.4e-07 57.8 40 77.5
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.4e-07 57.8 40 77.5
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 2.4e-07 57.8 40 77.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.4e-07 57.8 40 77.5
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.1e-07 57.4 42 76.2
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 77.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 77.5
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 77.5
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 75.0
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 77.5
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 75.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.0e-07 57.0 40 75.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 5.3e-07 56.6 40 77.5
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.3e-07 56.6 40 75.0
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 5.3e-07 56.6 40 75.0
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 5.3e-07 56.6 39 76.9
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.3e-07 56.6 40 75.0
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.3e-07 56.6 40 75.0
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.9e-07 56.2 40 75.0
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 6.9e-07 56.2 40 75.0
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.0e-07 55.8 40 72.5
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.0e-07 55.8 40 72.5
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 9.0e-07 55.8 40 72.5
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 9.0e-07 55.8 40 72.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 9.0e-07 55.8 40 75.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 9.0e-07 55.8 42 73.8
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.2e-06 55.5 39 76.9
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 75.0
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 75.0
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 75.0
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 75.0
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 75.0
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.2e-06 55.5 40 72.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.5e-06 55.1 40 72.5
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.5e-06 55.1 40 72.5
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.5e-06 55.1 40 72.5
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.0e-06 54.7 40 72.5
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.0e-06 54.7 39 74.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.0e-06 54.7 40 75.0
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 2.6e-06 54.3 40 72.5
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 2.6e-06 54.3 40 70.0
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 2.6e-06 54.3 40 72.5
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.6e-06 54.3 40 72.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.6e-06 54.3 39 74.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.4e-06 53.9 40 70.0
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 4.5e-06 53.5 40 70.0
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 4.5e-06 53.5 40 70.0
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 4.5e-06 53.5 40 70.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.5e-06 53.5 40 72.5
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.5e-06 53.5 40 70.0
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 4.5e-06 53.5 40 75.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.8e-06 53.1 39 71.8
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.8e-06 53.1 39 71.8
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.8e-06 53.1 40 75.0
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.8e-06 53.1 40 72.5
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.8e-06 53.1 39 71.8
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 7.6e-06 52.8 40 67.5
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 7.6e-06 52.8 40 75.0
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.6e-06 52.8 40 70.0
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.6e-06 52.8 40 70.0
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 7.6e-06 52.8 40 70.0
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.0e-05 52.4 40 75.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.0e-05 52.4 40 75.0
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.0e-05 52.4 40 75.0
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.0e-05 52.4 40 72.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.0e-05 52.4 39 71.8
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.0e-05 52.4 39 71.8


User provided reference genes

Program Settings