Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.3e-103 379.8 195 100.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 4.4e-56 221.9 138 84.1
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.0e-53 213.0 129 86.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.7e-52 209.9 131 84.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.1e-51 207.2 116 89.7
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.1e-51 207.2 116 89.7
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.5e-51 206.8 116 88.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.5e-51 206.8 127 81.9
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.5e-51 206.8 116 88.8
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.5e-51 206.8 116 88.8
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.3e-51 205.7 127 84.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.3e-51 205.3 138 77.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 4.3e-51 205.3 114 89.5
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 5.6e-51 204.9 116 87.9
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.1e-50 203.0 114 87.7
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.1e-50 203.0 136 78.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 2.8e-50 202.6 121 85.1
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.8e-50 202.6 127 83.5
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.6e-50 202.2 138 80.4
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 4.7e-50 201.8 114 88.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 6.2e-50 201.4 114 87.7
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 8.1e-50 201.1 138 77.5
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.1e-49 200.7 114 87.7
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-49 200.7 127 79.5
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.4e-49 200.3 114 88.6
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.8e-49 199.9 138 76.1
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.8e-49 199.9 114 85.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.3e-49 199.5 115 85.2
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.3e-49 199.5 138 73.9
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 4.0e-49 198.7 145 73.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 4.0e-49 198.7 138 75.4
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.0e-49 198.7 138 75.4
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.0e-49 198.7 138 76.8
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 5.2e-49 198.4 138 75.4
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 5.2e-49 198.4 117 85.5
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 8.9e-49 197.6 114 86.0
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.0e-48 196.4 165 64.8
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.0e-48 196.4 114 85.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.0e-48 196.4 138 74.6
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.0e-48 196.4 138 75.4
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.0e-48 196.4 138 71.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-48 196.1 138 74.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.4e-48 195.7 114 84.2
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.4e-48 195.7 129 76.7
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.4e-48 195.3 114 84.2
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 4.4e-48 195.3 138 76.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 4.4e-48 195.3 139 71.2
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.8e-48 194.9 129 78.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 7.5e-48 194.5 114 83.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 7.5e-48 194.5 114 83.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 7.5e-48 194.5 113 85.8
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 7.5e-48 194.5 113 85.8
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 7.5e-48 194.5 121 79.3
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 9.9e-48 194.1 114 83.3
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 9.9e-48 194.1 129 78.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 9.9e-48 194.1 110 88.2
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.3e-47 193.7 114 83.3
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-47 193.7 113 83.2
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.7e-47 193.4 113 85.8
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.7e-47 193.4 113 85.8
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.7e-47 193.4 113 85.8
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.9e-47 192.6 114 82.5
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.9e-47 192.6 138 73.9
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-47 192.6 113 82.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-47 192.6 113 82.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 3.7e-47 192.2 127 76.4
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 4.9e-47 191.8 141 70.2
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 6.4e-47 191.4 114 82.5
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 6.4e-47 191.4 114 82.5
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.4e-47 191.4 124 77.4
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 8.3e-47 191.0 114 81.6
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 8.3e-47 191.0 138 71.7
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.1e-46 190.7 117 82.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.4e-46 190.3 140 74.3
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.9e-46 189.9 117 81.2
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.9e-46 189.9 114 84.2
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.9e-46 189.9 114 82.5
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.2e-46 189.1 113 82.3
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 4.1e-46 188.7 119 79.8
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 5.4e-46 188.3 124 75.8
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 7.1e-46 188.0 114 84.2
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 7.1e-46 188.0 117 81.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.2e-45 187.2 129 76.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 3.5e-45 185.7 119 78.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.5e-45 185.7 137 73.0
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.5e-45 185.7 137 73.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.0e-45 184.9 113 79.6
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-45 184.9 125 76.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 6.0e-45 184.9 137 73.0
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 6.0e-45 184.9 120 78.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 7.8e-45 184.5 125 75.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 7.8e-45 184.5 126 75.4
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 7.8e-45 184.5 137 73.0
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 7.8e-45 184.5 117 79.5
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.0e-44 184.1 170 61.8
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-44 183.3 125 75.2
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-44 182.6 113 79.6
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-44 182.6 117 78.6
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 3.0e-44 182.6 113 79.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.1e-44 181.8 110 79.1
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.1e-44 181.8 110 79.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-44 181.8 117 77.8
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.6e-44 181.4 127 71.7
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 8.6e-44 181.0 137 71.5
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-43 180.6 117 76.1
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-43 179.9 117 76.1
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-43 179.9 117 76.1
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-43 179.9 137 70.8
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-43 179.1 117 76.1
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.3e-43 178.7 121 75.2
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 9.5e-43 177.6 181 56.9
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.1e-42 176.4 113 77.0
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.8e-42 176.0 138 71.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.8e-42 176.0 115 76.5
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 3.6e-42 175.6 113 77.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 4.7e-42 175.3 138 69.6
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.1e-41 174.1 113 76.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.4e-41 173.7 113 77.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.8e-41 171.4 125 69.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 9.9e-40 167.5 159 59.7
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.4e-38 162.9 117 68.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.2e-38 162.5 117 70.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.2e-38 162.5 114 72.8
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.4e-38 161.8 117 70.1
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 7.1e-38 161.4 116 74.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 4.6e-37 158.7 121 67.8
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.8e-37 157.9 117 69.2
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 7.8e-37 157.9 117 65.8
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 2.3e-36 156.4 114 64.0
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.2e-34 150.6 88 85.2
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.6e-34 150.2 87 87.4
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.4e-33 147.1 126 57.1
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.8e-33 146.7 108 70.4
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.8e-31 139.0 91 82.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.7e-28 130.2 211 40.8
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.1e-26 123.2 70 88.6
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 5.3e-25 118.6 74 82.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 5.3e-25 118.6 74 82.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-24 116.3 74 81.1
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 3.4e-24 115.9 77 76.6
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 9.9e-24 114.4 146 42.5
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.9e-23 112.8 114 48.2
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 6.4e-23 111.7 64 89.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 7.9e-21 104.8 68 79.4
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 7.9e-21 104.8 60 78.3
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.6e-19 97.8 58 79.3
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-18 97.4 58 79.3
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.4e-16 89.4 58 72.4
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 8.4e-15 84.7 108 38.0
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.4e-14 83.2 50 76.0
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.3e-14 81.3 62 66.1
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 9.3e-14 81.3 78 60.3
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.7e-13 79.7 115 34.8
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.0e-13 78.6 62 64.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.9e-11 73.6 49 73.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.9e-11 73.6 49 73.5
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.3e-10 70.9 46 73.9
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.3e-07 60.8 47 70.2


User provided reference genes

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