Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06960 Coffea canephora HOM05D003326 ORTHO05D001185 2.2e-256 888.6 506 100.0
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 5.6e-135 485.3 630 46.7
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 1.4e-101 374.4 544 43.8
Cc00_g02470 Coffea canephora HOM05D003326 ORTHO05D001185 1.9e-95 354.0 225 76.9
Cc00_g18930 Coffea canephora HOM05D003326 ORTHO05D001185 6.9e-85 318.9 414 45.7
Cc04_g13130 Coffea canephora HOM05D003326 ORTHO05D001185 1.3e-83 314.7 527 41.0
Cc00_g33430 Coffea canephora HOM05D003326 ORTHO05D001185 2.1e-73 280.8 213 63.4
Cc00_g25430 Coffea canephora HOM05D003326 ORTHO05D001185 1.0e-72 278.5 214 65.0
Cc00_g32960 Coffea canephora HOM05D003326 ORTHO05D001185 8.7e-72 275.4 199 66.3
Cc04_g13630 Coffea canephora HOM05D003326 ORTHO05D001185 1.2e-68 265.0 214 63.1
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 4.2e-66 256.5 515 37.5
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 8.5e-59 232.3 560 34.5
Cc00_g19430 Coffea canephora HOM05D003326 ORTHO05D001185 2.2e-54 217.6 191 57.1
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 1.2e-44 185.3 165 58.2
Cc04_g10970 Coffea canephora HOM05D003376 ORTHO05D001185 2.7e-36 157.5 372 34.1
Cc00_g31480 Coffea canephora HOM05D003326 ORTHO05D001185 9.8e-31 139.0 248 35.9
Cc00_g26310 Coffea canephora HOM05D003326 ORTHO05D001185 2.8e-30 137.5 222 37.8
Cc00_g25940 Coffea canephora HOM05D003326 ORTHO05D001185 9.2e-21 105.9 125 47.2
Cc00_g23170 Coffea canephora HOM05D003376 ORTHO05D011089 2.2e-14 84.7 130 39.2
Cc00_g25700 Coffea canephora HOM05D003326 ORTHO05D001185 2.2e-14 84.7 151 35.1
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 4.1e-13 80.5 499 21.8
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 1.7e-11 75.1 499 21.4
Cc00_g19450 Coffea canephora HOM05D003376 ORTHO05D001185 1.6e-09 68.6 358 24.9
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 2.3e-08 64.7 143 31.5
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 8.9e-08 62.8 163 29.4
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 8.9e-08 62.8 163 28.8
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.2e-07 62.4 117 31.6
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.0e-07 61.6 163 28.8
BraA01t02300Z Brassica rapa HOM05D003376 ORTHO05D001185 2.0e-07 61.6 96 33.3
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 2.6e-07 61.2 497 24.5
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.4e-07 60.5 163 28.2
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 7.5e-07 59.7 163 28.2
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 7.5e-07 59.7 491 21.4
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.3e-06 58.9 168 28.0
A01p23930 Brassica napus HOM05D003376 ORTHO05D001185 1.7e-06 58.5 96 32.3
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 6.4e-06 56.6 509 20.4
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 8.3e-06 56.2 59 39.0
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 8.3e-06 56.2 135 26.7


User provided reference genes

Program Settings