Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 7.0e-148 527.3 277 100.0
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.6e-70 269.6 278 52.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 5.5e-68 261.9 207 62.3
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 4.6e-67 258.8 207 61.4
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.6e-67 258.8 235 55.3
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 7.9e-67 258.1 283 49.8
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 7.9e-67 258.1 240 53.8
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.5e-65 253.1 193 63.2
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.5e-65 253.1 193 63.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 4.3e-65 252.3 179 64.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.3e-64 250.8 151 72.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 4.1e-63 245.7 149 74.5
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 9.0e-63 244.6 268 48.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 3.4e-62 242.7 151 74.2
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 3.4e-62 242.7 151 74.2
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.4e-62 242.7 270 49.3
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 4.5e-62 242.3 156 68.6
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.3e-61 240.7 207 58.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.7e-61 240.4 202 58.9
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.9e-61 239.6 170 65.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-60 237.7 151 72.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.1e-60 237.7 204 59.8
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.9e-60 236.9 208 56.2
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.5e-60 236.5 244 50.4
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.5e-60 236.5 215 55.8
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.5e-60 236.5 215 55.8
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.2e-60 236.1 194 58.8
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 4.2e-60 235.7 202 57.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.6e-59 233.8 154 68.8
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.7e-59 233.0 247 49.4
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 4.6e-59 232.3 167 64.1
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.8e-58 230.3 205 55.6
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.8e-58 230.3 205 55.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.9e-58 229.2 197 57.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 3.9e-58 229.2 167 63.5
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.9e-58 229.2 151 68.2
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 5.1e-58 228.8 168 64.3
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.1e-58 228.8 170 63.5
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 6.7e-58 228.4 230 50.9
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 6.7e-58 228.4 157 64.3
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 8.7e-58 228.0 233 50.2
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 8.7e-58 228.0 167 64.1
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-57 227.6 167 63.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.1e-57 227.6 167 63.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.1e-57 227.6 157 64.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-57 226.9 151 67.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-57 226.9 151 67.5
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-57 226.9 163 63.8
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.9e-57 226.9 170 63.5
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.5e-57 226.5 192 58.3
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 3.3e-57 226.1 168 63.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 4.3e-57 225.7 164 63.4
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 9.7e-57 224.6 176 60.2
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.8e-56 223.0 167 62.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.8e-56 223.0 167 62.3
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.8e-56 223.0 167 62.3
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.8e-56 223.0 199 55.8
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.7e-56 222.6 175 58.9
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.8e-55 220.3 156 63.5
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 2.4e-55 219.9 151 64.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.3e-55 218.8 196 55.1
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.2e-54 217.6 204 54.4
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.5e-54 217.2 201 51.7
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.5e-54 217.2 157 62.4
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.0e-54 216.9 172 59.3
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.6e-54 216.5 175 60.6
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 5.9e-54 215.3 149 62.4
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 7.7e-54 214.9 268 44.4
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.0e-53 214.5 163 60.1
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.3e-53 214.2 205 52.2
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.8e-53 212.6 153 62.1
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 3.8e-53 212.6 153 62.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.4e-52 210.7 197 54.3
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.4e-52 210.7 197 54.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.9e-52 210.3 165 58.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.6e-51 207.2 168 60.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.7e-51 206.5 165 56.4
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.6e-51 206.1 141 63.1
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 4.6e-51 205.7 267 43.4
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 7.9e-51 204.9 145 61.4
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.4e-50 204.1 165 57.6
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 2.3e-50 203.4 190 50.0
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.3e-50 203.4 165 57.6
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.0e-50 203.0 157 56.7
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.1e-49 201.1 141 61.7
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.0e-49 200.3 164 57.3
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-49 199.9 165 55.2
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-49 199.9 165 55.2
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-49 199.9 165 55.2
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-49 199.9 165 55.2
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 7.4e-49 198.4 222 46.4
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.3e-48 197.6 170 54.1
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.3e-48 197.6 202 51.5
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.3e-48 197.6 176 55.7
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.7e-48 197.2 222 44.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.7e-48 197.2 149 58.4
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 3.7e-48 196.1 184 51.6
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 8.2e-48 194.9 144 62.5
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.9e-47 191.8 153 57.5
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 5.9e-46 188.7 164 56.1
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.2e-45 186.8 159 59.1
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 4.2e-44 182.6 151 57.0
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.4e-44 181.4 146 58.9
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 2.7e-43 179.9 159 52.2
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.6e-43 179.5 161 51.6
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 6.1e-43 178.7 180 51.1
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.7e-42 175.3 182 50.0
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 3.3e-41 172.9 191 49.2
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.4e-39 166.8 134 59.7
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 2.4e-39 166.8 147 55.8
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 7.0e-39 165.2 168 48.2
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 9.1e-39 164.9 173 48.6
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.2e-38 164.5 163 49.1
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.2e-38 164.5 182 44.0
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.7e-37 160.6 99 69.7
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 5.0e-37 159.1 131 53.4
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 5.5e-36 155.6 100 67.0
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 5.5e-36 155.6 101 64.4
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.1e-35 153.7 133 50.4
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 4.0e-34 149.4 136 50.0
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 3.7e-32 142.9 172 44.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.8e-31 140.6 168 45.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.8e-31 140.6 168 45.2
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 4.1e-31 139.4 135 48.1
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 5.3e-31 139.0 100 56.0
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 2.7e-30 136.7 99 59.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-29 134.0 97 59.8
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.4e-26 124.4 99 55.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.5e-25 120.9 110 54.5
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-23 114.8 70 71.4
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 9.1e-23 111.7 124 48.4
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.5e-22 109.8 70 68.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.0e-21 108.2 80 57.5
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 3.8e-21 106.3 57 73.7
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.5e-20 102.4 76 61.8
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-18 97.4 86 52.3
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 8.8e-18 95.1 84 58.3
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.1e-15 86.7 56 69.6
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 9.2e-15 85.1 147 39.5
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-14 84.7 65 58.5
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.0e-14 84.0 55 70.9
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.7e-14 83.6 82 48.8
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.0e-13 81.6 64 59.4
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 6.6e-13 79.0 96 45.8
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 4.3e-12 76.3 86 48.8
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 6.1e-11 72.4 65 44.6
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 8.0e-11 72.0 157 33.1
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 2.6e-09 67.0 88 42.0
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 5.7e-09 65.9 76 51.3
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 6.4e-08 62.4 37 67.6
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 2.0e-06 57.4 34 64.7
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 2.7e-06 57.0 88 35.2
PRCOL_00003051 Prasinoderma coloniale HOM05D046594 ORTHO05D005201 4.6e-06 56.2 100 33.0


User provided reference genes

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