Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.3e-24 114.0 49 100.0
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.7e-12 73.9 38 92.1
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 6.4e-12 73.2 38 89.5
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 8.3e-12 72.8 38 89.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.4e-11 71.2 38 89.5
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 2.4e-11 71.2 38 86.8
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 3.2e-11 70.9 38 86.8
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.2e-11 70.9 38 86.8
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 3.2e-11 70.9 38 86.8
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 3.2e-11 70.9 38 86.8
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 3.2e-11 70.9 38 86.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 4.1e-11 70.5 38 86.8
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 5.4e-11 70.1 38 86.8
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 7.0e-11 69.7 38 84.2
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 7.0e-11 69.7 38 84.2
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 7.0e-11 69.7 38 86.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.2e-10 68.9 38 84.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.2e-10 68.9 38 84.2
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.6e-10 68.6 38 81.6
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.6e-10 68.6 38 84.2
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.0e-10 68.2 38 84.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.7e-10 67.8 38 81.6
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.0e-10 66.6 38 81.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 7.8e-10 66.2 38 81.6
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.3e-09 64.7 38 78.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.3e-09 64.7 38 78.9
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.9e-09 63.9 38 78.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 3.1e-06 54.3 38 63.2


User provided reference genes

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