Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 9.2e-50 199.9 100 100.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 9.9e-44 179.9 100 87.0
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 4.6e-41 171.0 100 85.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 4.6e-41 171.0 100 85.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.3e-40 169.5 100 83.0
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 2.3e-40 168.7 100 83.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 3.9e-40 167.9 100 84.0
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.1e-39 166.4 100 81.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.1e-39 166.4 100 81.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 4.3e-39 164.5 100 81.0
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.1e-37 159.8 100 78.0
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.4e-37 158.7 100 76.0
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 6.8e-37 157.1 100 81.0
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 8.9e-37 156.8 100 83.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 8.9e-37 156.8 100 82.0
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.2e-36 156.4 102 79.4
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.5e-36 156.0 98 75.5
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.5e-36 156.0 100 76.0
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.6e-36 155.2 101 76.2
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 3.4e-36 154.8 100 79.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 4.4e-36 154.5 100 79.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 7.6e-36 153.7 100 79.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 9.9e-36 153.3 100 77.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 9.9e-36 153.3 100 79.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.7e-35 152.5 100 78.0
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.2e-35 152.1 100 78.0
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.2e-35 152.1 100 78.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 2.2e-35 152.1 100 79.0
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 2.2e-35 152.1 100 79.0
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.2e-35 152.1 100 80.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 2.9e-35 151.8 100 78.0
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.9e-35 151.8 100 78.0
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.9e-35 151.8 100 78.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 3.8e-35 151.4 100 77.0
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.8e-35 151.4 100 77.0
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.9e-35 151.0 100 77.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.9e-35 151.0 100 77.0
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 6.4e-35 150.6 100 76.0
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 6.4e-35 150.6 100 75.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 8.4e-35 150.2 100 79.0
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-34 149.8 100 76.0
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-34 149.8 100 76.0
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-34 149.8 100 76.0
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-34 149.8 100 76.0
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.1e-34 149.8 100 76.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.1e-34 149.8 105 76.2
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.4e-34 149.4 100 78.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.9e-34 149.1 99 76.8
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 2.4e-34 148.7 100 75.0
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 2.4e-34 148.7 100 75.0
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 3.2e-34 148.3 100 75.0
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 3.2e-34 148.3 100 75.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 3.2e-34 148.3 100 75.0
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 3.2e-34 148.3 100 77.0
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.2e-34 148.3 100 77.0
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 4.2e-34 147.9 100 76.0
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 4.2e-34 147.9 100 77.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 4.2e-34 147.9 100 76.0
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 5.4e-34 147.5 100 75.0
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 5.4e-34 147.5 99 75.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.1e-34 147.1 100 73.0
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 7.1e-34 147.1 100 74.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 7.1e-34 147.1 100 76.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 7.1e-34 147.1 100 77.0
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 9.2e-34 146.7 100 75.0
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 76.0
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 74.0
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 72.0
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 71.0
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.6e-33 146.0 100 71.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 74.0
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 74.0
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 74.0
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 74.0
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 74.0
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 73.0
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.1e-33 145.6 100 76.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 74.0
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 73.0
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 73.0
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 73.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 73.0
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 73.0
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 3.5e-33 144.8 98 75.5
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 73.0
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 76.0
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 3.5e-33 144.8 99 76.8
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.5e-33 144.8 124 64.5
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 76.0
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 4.6e-33 144.4 102 77.5
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 4.6e-33 144.4 100 75.0
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 7.8e-33 143.7 100 76.0
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.0e-32 143.3 100 71.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.0e-32 143.3 100 76.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 1.0e-32 143.3 100 74.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 74.0
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 72.0
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 76.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 74.0
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 3.9e-32 141.4 100 73.0
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 5.1e-32 141.0 100 73.0
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 5.1e-32 141.0 100 75.0
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 5.1e-32 141.0 101 75.2
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 8.7e-32 140.2 100 69.0
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.5e-31 139.4 102 73.5
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 3.3e-31 138.3 100 73.0
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 4.3e-31 137.9 106 71.7
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.6e-31 137.5 100 69.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 7.3e-31 137.1 98 72.4
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.3e-30 136.3 110 66.4
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.6e-30 136.0 102 71.6
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.6e-30 136.0 100 69.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.1e-30 135.6 96 70.8
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.8e-30 135.2 102 70.6
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 3.6e-30 134.8 105 71.4
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.6e-30 134.8 94 71.3
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 4.8e-30 134.4 102 70.6
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 4.8e-30 134.4 100 70.0
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 4.8e-30 134.4 100 70.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 8.1e-30 133.7 94 70.2
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.4e-29 132.1 100 65.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.4e-29 132.1 100 65.0
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 2.4e-29 132.1 94 69.1
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 3.1e-29 131.7 100 69.0
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 3.1e-29 131.7 157 52.2
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 4.0e-29 131.3 94 70.2
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 9.0e-29 130.2 100 69.0
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.2e-28 129.8 100 68.0
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.6e-28 128.6 124 58.9
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.4e-28 128.3 76 82.9
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 7.6e-28 127.1 99 65.7
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 2.2e-27 125.6 103 68.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.9e-27 125.2 76 81.6
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.9e-27 125.2 76 81.6
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.9e-27 125.2 76 81.6
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.4e-26 122.1 76 77.6
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 4.2e-26 121.3 98 65.3
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 5.4e-26 120.9 130 51.5
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 4.6e-25 117.9 80 77.5
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 4.6e-25 117.9 99 64.6
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 4.6e-25 117.9 94 63.8
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.3e-24 115.5 100 60.0
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 3.9e-24 114.8 100 60.0
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.6e-24 114.0 60 90.0
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 1.9e-23 112.5 108 57.4
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.1e-21 106.7 74 71.6
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.4e-21 106.3 99 57.6
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 2.6e-20 102.1 63 79.4
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 2.2e-19 99.0 85 63.5
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.4e-18 96.3 87 57.5
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 7.1e-18 94.0 61 67.2
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 8.4e-11 70.5 98 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 4.2e-10 68.2 94 43.6
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 6.0e-09 64.3 68 48.5


User provided reference genes

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