Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 0.0e+00 1086.2 549 100.0
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.5e-210 736.5 563 70.9
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.8e-209 731.5 510 73.3
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.4e-208 729.2 558 69.0
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.6e-207 726.5 568 68.3
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.6e-207 725.7 503 74.4
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.9e-206 722.2 409 85.6
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.8e-206 721.8 554 68.8
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 5.5e-205 718.0 557 68.4
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 9.4e-205 717.2 484 75.2
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 9.4e-205 717.2 573 66.8
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.2e-204 716.8 532 72.7
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.1e-204 716.1 550 68.2
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.7e-204 715.7 483 74.9
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.6e-204 715.3 510 72.7
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 2.3e-203 712.6 555 68.6
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-202 710.3 483 74.5
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.0e-202 709.5 500 73.2
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 2.6e-202 709.1 550 68.2
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 3.7e-201 705.3 576 67.5
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 8.2e-201 704.1 544 68.4
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.1e-200 703.7 482 73.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 5.3e-200 701.4 559 66.9
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 9.1e-200 700.7 519 70.7
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.2e-199 700.3 533 68.5
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.0e-199 699.5 561 67.6
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.7e-199 699.1 483 73.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 3.5e-199 698.7 552 69.6
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 4.5e-199 698.4 498 71.5
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.7e-198 696.4 498 70.7
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.2e-198 696.0 525 69.3
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 5.0e-198 694.9 414 81.2
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 6.5e-198 694.5 412 83.0
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 6.5e-198 694.5 568 65.0
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 8.5e-198 694.1 519 69.9
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 2.5e-197 692.6 515 70.3
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 4.2e-197 691.8 520 70.0
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 5.5e-197 691.4 567 66.0
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 5.5e-197 691.4 515 69.9
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.6e-196 689.9 499 70.3
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.1e-196 689.5 501 73.1
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.6e-196 688.7 500 73.0
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 4.7e-196 688.3 565 65.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 8.0e-196 687.6 497 71.6
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.4e-195 686.8 557 67.3
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.4e-195 686.8 556 68.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-195 686.4 549 69.0
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.3e-195 686.0 414 80.7
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 5.2e-195 684.9 480 71.2
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.2e-194 683.7 414 80.7
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 2.6e-194 682.6 413 80.6
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 3.4e-194 682.2 547 65.8
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.7e-194 681.4 556 67.6
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 9.8e-194 680.6 507 68.2
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.3e-193 680.2 544 65.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.3e-193 680.2 492 70.9
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.7e-193 679.9 576 66.5
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.7e-193 679.9 555 67.6
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 2.8e-193 679.1 535 66.5
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 4.8e-193 678.3 413 80.9
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 8.3e-193 677.6 503 68.2
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 8.3e-193 677.6 497 68.6
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.1e-192 677.2 497 70.4
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.8e-192 676.4 573 64.4
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.8e-192 676.4 568 66.9
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 2.4e-192 676.0 571 63.6
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.4e-192 676.0 521 67.0
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.1e-192 675.6 521 69.7
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 3.1e-192 675.6 409 79.0
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 4.1e-192 675.2 446 75.8
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 5.4e-192 674.9 454 74.7
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 5.4e-192 674.9 474 71.5
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.0e-192 674.5 546 65.9
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 9.1e-192 674.1 453 74.8
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.6e-191 673.3 557 64.8
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.0e-191 672.9 494 68.8
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.7e-191 672.5 531 68.4
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.5e-191 672.2 527 65.7
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 3.5e-191 672.2 570 63.3
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 4.5e-191 671.8 411 80.3
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 5.9e-191 671.4 530 68.7
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 5.9e-191 671.4 561 63.6
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.7e-191 671.0 546 65.6
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.3e-190 670.2 405 81.0
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 2.3e-190 669.5 494 69.2
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.9e-190 669.1 409 79.7
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 5.0e-190 668.3 506 70.0
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 5.0e-190 668.3 436 75.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.0e-190 668.3 500 68.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 6.6e-190 667.9 549 65.4
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.1e-189 667.2 560 64.3
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.5e-189 666.0 412 79.1
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 8.0e-188 661.0 483 71.4
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 3.0e-187 659.1 503 68.0
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.2e-186 657.1 448 73.7
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.6e-186 656.0 406 77.3
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.6e-186 656.0 404 79.2
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 7.5e-186 654.4 411 78.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.8e-186 654.1 584 60.4
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.8e-185 652.5 519 66.7
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-184 650.6 492 67.9
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.1e-184 650.6 405 77.8
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.1e-184 650.6 482 69.3
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.1e-184 649.0 409 76.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.1e-184 649.0 507 67.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.7e-183 646.0 525 65.3
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 1.3e-182 643.7 502 70.7
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.5e-181 639.4 474 69.2
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-180 637.1 504 65.9
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 2.8e-180 636.0 501 65.7
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 4.7e-180 635.2 499 66.7
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 6.1e-180 634.8 499 66.7
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 8.0e-180 634.4 499 66.5
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.0e-179 634.0 505 65.0
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.4e-179 633.6 536 63.2
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.8e-179 633.3 499 65.9
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.3e-179 632.9 552 62.0
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 5.2e-179 631.7 407 76.4
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.2e-179 631.7 499 66.3
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-178 630.6 407 76.2
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.2e-178 630.6 407 76.2
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-178 630.6 407 76.2
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.5e-178 630.2 538 63.2
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.0e-178 629.8 407 76.2
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-177 627.1 406 75.6
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 6.4e-177 624.8 516 67.2
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.4e-176 621.7 361 82.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 7.0e-176 621.3 561 60.8
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.2e-175 620.5 579 57.7
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 2.0e-175 619.8 502 65.7
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.0e-174 617.5 510 63.7
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.0e-174 615.1 447 71.6
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-173 613.6 363 82.6
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.3e-169 600.5 339 85.3
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.8e-163 580.1 385 74.0
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.9e-161 572.8 556 58.5
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.3e-150 536.6 391 68.0
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.3e-145 520.8 354 70.6
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.9e-145 519.6 389 66.8
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.5e-141 507.3 449 58.8
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 7.9e-135 485.0 375 66.9
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.6e-132 477.2 372 64.2
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 9.0e-131 471.5 302 73.5
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.1e-99 368.2 378 51.1
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 4.5e-98 362.8 209 80.4
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 6.3e-92 342.4 196 80.6
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-88 331.6 340 60.0
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 4.5e-82 309.7 179 79.3
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.1e-75 288.5 158 83.5
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.8e-75 287.7 155 85.2
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.8e-75 287.7 155 85.2
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 2.5e-72 277.3 242 59.9
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.3e-65 255.0 357 42.6
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 3.4e-61 240.4 362 37.6
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.7e-55 219.9 136 80.1
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.5e-53 214.9 302 37.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.9e-49 200.3 127 80.3
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.6e-45 187.6 262 38.9
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-42 178.7 183 53.0
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 4.3e-40 170.2 109 73.4
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 9.3e-35 152.5 110 66.4
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.1e-33 146.7 88 76.1
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 2.5e-32 144.4 154 51.3
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 4.8e-31 140.2 210 37.6
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.1e-30 139.0 95 70.5
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 6.9e-30 136.3 124 56.5
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.5e-29 135.2 83 72.3
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-28 131.7 83 69.9
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.1e-22 112.5 120 50.0
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 4.9e-20 103.6 98 56.1
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 8.4e-20 102.8 194 41.8
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.1e-16 92.4 90 55.6
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.5e-13 82.0 175 34.3
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 4.9e-12 77.0 111 38.7
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 4.9e-12 77.0 40 87.5
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 3.1e-06 57.8 32 71.9


User provided reference genes

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