Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06360 Coffea canephora HOM05D001135 ORTHO05D001005 3.7e-54 214.5 102 100.0
Cc00_g25520 Coffea canephora HOM05D001135 ORTHO05D001005 6.8e-08 60.8 64 51.6
Cc04_g05310 Coffea canephora HOM05D001135 ORTHO05D001005 6.8e-08 60.8 64 51.6
Dinv21427 Davidia involucrata HOM05D001135 ORTHO05D001005 1.2e-07 60.1 68 48.5
Dinv42818 Davidia involucrata HOM05D001135 ORTHO05D001005 1.2e-07 60.1 34 79.4
Dinv43282 Davidia involucrata HOM05D001135 ORTHO05D001005 1.2e-07 60.1 34 79.4
Hma1.2p1_0329F.1_g127300 Hydrangea macrophylla HOM05D001135 ORTHO05D001005 1.2e-07 60.1 65 50.8
Cc00_g29340 Coffea canephora HOM05D001135 ORTHO05D001005 3.4e-07 58.5 86 45.3
Rhsim08G0203000 Rhododendron simsii HOM05D001135 ORTHO05D001005 3.4e-07 58.5 67 49.3
TAR636G2467 Trochodendron aralioides HOM05D001135 ORTHO05D001005 3.4e-07 58.5 34 76.5
MSTRG.6161 Avicennia marina HOM05D001135 ORTHO05D001005 4.4e-07 58.2 34 76.5
QL02p094197 Quercus lobata HOM05D001135 ORTHO05D001005 4.4e-07 58.2 65 53.8
Actinidia18262 Actinidia chinensis HOM05D001135 ORTHO05D001005 5.8e-07 57.8 66 50.0
SalBow1G3593 Salvia bowleyana HOM05D001135 ORTHO05D001005 7.5e-07 57.4 64 46.9
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 9.8e-07 57.0 64 53.1
Hma1.2p1_0028F.1_g017750 Hydrangea macrophylla HOM05D001135 ORTHO05D001005 9.8e-07 57.0 34 73.5
SEGI_07332 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 9.8e-07 57.0 34 76.5
SEGI_34262 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 9.8e-07 57.0 34 76.5
Sc10g0008440 Simmondsia chinensis HOM05D001135 ORTHO05D001005 9.8e-07 57.0 44 63.6
GSVIVG01023689001 Vitis vinifera HOM05D001135 ORTHO05D001005 9.8e-07 57.0 34 76.5
CSS0026809 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 1.3e-06 56.6 66 48.5
CiPaw.01G256600 Carya illinoinensis HOM05D001135 ORTHO05D001005 1.3e-06 56.6 41 68.3
Ciclev10007906m.g Citrus clementina HOM05D001135 ORTHO05D001005 1.3e-06 56.6 34 76.5
Ciclev10027000m.g Citrus clementina HOM05D001135 ORTHO05D001005 1.3e-06 56.6 41 68.3
Eucgr.C00240 Eucalyptus grandis HOM05D001135 ORTHO05D001005 1.3e-06 56.6 34 76.5
FvH4_4g10180 Fragaria vesca HOM05D001135 ORTHO05D001005 1.3e-06 56.6 65 47.7
FAN07G1157 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.3e-06 56.6 65 47.7
FAN12G0084 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.3e-06 56.6 65 47.7
FAN12G1115 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.3e-06 56.6 65 47.7
FAN17G2483 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.3e-06 56.6 65 47.7
FAN22G2220 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.3e-06 56.6 65 47.7
MBI15_g08405_MAGBIO Magnolia biondii HOM05D001135 ORTHO05D001005 1.3e-06 56.6 34 76.5
Os09g0128400 Oryza sativa ssp. japonica HOM05D001135 ORTHO05D001005 1.3e-06 56.6 34 76.5
TAR383G0191 Trochodendron aralioides HOM05D001135 ORTHO05D001005 1.3e-06 56.6 34 76.5
Atru.chr1.2806 Acer truncatum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 34 76.5
Ah.09g231790 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Ah.14g085680 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
MSTRG.11220 Avicennia marina HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
MSTRG.4669 Avicennia marina HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
EL10Ac8g19402 Beta vulgaris HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
CAN.G1598.6 Capsicum annuum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Cfa020784 Carpinus fangiana HOM05D001135 ORTHO05D001005 1.7e-06 56.2 64 48.4
AUR62032997 Chenopodium quinoa HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
AUR62034070 Chenopodium quinoa HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Haze_19140 Corylus avellana HOM05D001135 ORTHO05D001005 1.7e-06 56.2 64 48.4
Duzib187G0751 Durio zibethinus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 34 76.5
Duzib235G0183 Durio zibethinus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Migut.D01144 Erythranthe guttata HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Gohir.A10G000500 Gossypium hirsutum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Gohir.D10G000600 Gossypium hirsutum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Gorai.011G001000 Gossypium raimondii HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
HanXRQChr03g0066021 Helianthus annuus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 35 68.6
HanXRQChr05g0153681 Helianthus annuus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
HanXRQChr12g0357761 Helianthus annuus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 34 73.5
Lsat_1_v5_gn_5_9001 Lactuca sativa HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Lj9C491T6 Lonicera japonica HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Manes.11G069400 Manihot esculenta HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Nitab4.5_0000886g0090 Nicotiana tabacum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Nitab4.5_0002700g0030 Nicotiana tabacum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Nitab4.5_0004738g0080 Nicotiana tabacum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Nitab4.5_0007797g0010 Nicotiana tabacum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Oeu023307.2 Olea europaea HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Oeu036708.3 Olea europaea HOM05D001135 ORTHO05D008333 1.7e-06 56.2 28 89.3
PSO063G4052 Papaver somniferum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 64 50.0
PSO782G2293 Papaver somniferum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 64 50.0
Peaxi162Scf00314g01029 Petunia axillaris HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Potri.001G041800 Populus trichocarpa HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Potri.003G185050 Populus trichocarpa HOM05D001135 ORTHO05D001005 1.7e-06 56.2 34 76.5
Sabra01G0028600 Salix brachista HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Sabra03G0135400 Salix brachista HOM05D001135 ORTHO05D001005 1.7e-06 56.2 34 76.5
SalBow1G6428 Salvia bowleyana HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Hund12558 Selenicereus undatus HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Solyc03g117680.4 Solanum lycopersicum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Solyc06g068540.3 Solanum lycopersicum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Sopen03g036590 Solanum pennellii HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Sopen06g025800 Solanum pennellii HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
PGSC0003DMG400014214 Solanum tuberosum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
PGSC0003DMG400028923 Solanum tuberosum HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
Thecc.06G046700 Theobroma cacao HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
TWI34G1510 Tripterygium wilfordii HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
unitig_0.g353 Utricularia gibba HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
unitig_52.g17021 Utricularia gibba HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
unitig_62.g23834 Utricularia gibba HOM05D001135 ORTHO05D001005 1.7e-06 56.2 28 89.3
vmacro13050 Vaccinium macrocarpon HOM05D001135 ORTHO05D001005 1.7e-06 56.2 64 45.3
Aqoxy7G02396 Aquilegia oxysepala HOM05D001135 ORTHO05D001005 2.2e-06 55.8 34 73.5
Aqoxy7G03328 Aquilegia oxysepala HOM05D001135 ORTHO05D001005 2.2e-06 55.8 34 73.5
CANSAT11G0276 Cannabis sativa HOM05D001135 ORTHO05D001005 2.2e-06 55.8 65 47.7
Dinv23268 Davidia involucrata HOM05D001135 ORTHO05D001005 2.2e-06 55.8 66 47.0
Duzib150G1425 Durio zibethinus HOM05D001135 ORTHO05D001005 2.2e-06 55.8 66 47.0
ECA246G3028 Erigeron canadensis HOM05D001135 ORTHO05D001005 2.2e-06 55.8 65 47.7
TAR625G1247 Trochodendron aralioides HOM05D001135 ORTHO05D001005 2.2e-06 55.8 34 73.5
TAR626G0418 Trochodendron aralioides HOM05D001135 ORTHO05D001005 2.2e-06 55.8 64 50.0
MELO3C004115.2 Cucumis melo HOM05D001135 ORTHO05D001005 2.9e-06 55.5 65 47.7
CsaV3_2G007700 Cucumis sativus L. HOM05D001135 ORTHO05D001005 2.9e-06 55.5 65 49.2
PGR114G0001 Punica granatum HOM05D001135 ORTHO05D001005 2.9e-06 55.5 34 73.5
PGR142G0228 Punica granatum HOM05D001135 ORTHO05D001005 2.9e-06 55.5 34 73.5
Sed0000221 Sechium edule HOM05D001135 ORTHO05D001005 2.9e-06 55.5 34 73.5
GSVIVG01016101001 Vitis vinifera HOM05D001135 ORTHO05D001005 2.9e-06 55.5 34 70.6
Zm00001eb278350 Zea mays HOM05D001135 ORTHO05D001005 2.9e-06 55.5 34 73.5
Zm00001eb374460 Zea mays HOM05D001135 ORTHO05D001005 2.9e-06 55.5 34 73.5
ATR0580G439 Amborella trichopoda HOM05D001135 ORTHO05D001005 3.7e-06 55.1 34 73.5
ClCG02G014300 Citrullus lanatus HOM05D001135 ORTHO05D001005 3.7e-06 55.1 65 47.7
DCAR_016317 Daucus carota HOM05D001135 ORTHO05D001005 3.7e-06 55.1 34 73.5
Migut.J01391 Erythranthe guttata HOM05D001135 ORTHO05D001005 3.7e-06 55.1 65 44.6
MD00G1164000 Malus domestica HOM05D001135 ORTHO05D001005 3.7e-06 55.1 37 70.3
Nn8g40088 Nelumbo nucifera HOM05D001135 ORTHO05D001005 3.7e-06 55.1 34 73.5
Peaxi162Scf00563g00415 Petunia axillaris HOM05D001135 ORTHO05D001005 3.7e-06 55.1 64 45.3
Rhsim01G0023700 Rhododendron simsii HOM05D001135 ORTHO05D001005 3.7e-06 55.1 34 67.6
Sed0013487 Sechium edule HOM05D001135 ORTHO05D001005 3.7e-06 55.1 65 49.2
Thecc.09G154000 Theobroma cacao HOM05D001135 ORTHO05D001005 3.7e-06 55.1 65 47.7
vmacro19073 Vaccinium macrocarpon HOM05D001135 ORTHO05D001005 3.7e-06 55.1 65 49.2
Atru.chr7.356 Acer truncatum HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
MSTRG.9394 Avicennia marina HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Cpa.g.sc199.17 Carica papaya HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 73.5
CiPaw.15G164400 Carya illinoinensis HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 73.5
COL.COLO4_05402 Corchorus olitorius HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 73.5
COL.COLO4_26778 Corchorus olitorius HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
MELO3C024885.2 Cucumis melo HOM05D001135 ORTHO05D001005 4.9e-06 54.7 64 46.9
CsaV3_3G032660 Cucumis sativus L. HOM05D001135 ORTHO05D001005 4.9e-06 54.7 64 46.9
ECA234G0452 Erigeron canadensis HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 70.6
Glyma.04G156300 Glycine max HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Glyma.06G223400 Glycine max HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Gohir.A08G087900 Gossypium hirsutum HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 73.5
Gohir.D08G099000 Gossypium hirsutum HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 73.5
Gorai.004G106800 Gossypium raimondii HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 73.5
Hma1.2p1_1914F.1_g307400 Hydrangea macrophylla HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Lj6g0007635 Lotus japonicus HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
MD16G1259500 Malus domestica HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Phvul.009G196100 Phaseolus vulgaris HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Potri.006G180500 Populus trichocarpa HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Potri.018G102800 Populus trichocarpa HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Rhsim12G0185300 Rhododendron simsii HOM05D001135 ORTHO05D001005 4.9e-06 54.7 34 70.6
RcHm_v2.0_Chr4g0405561 Rosa chinensis HOM05D001135 ORTHO05D001005 4.9e-06 54.7 65 46.2
Sabra18G0088300 Salix brachista HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
VMungo1309G0129 Vigna mungo HOM05D001135 ORTHO05D001005 4.9e-06 54.7 28 85.7
Actinidia26579 Actinidia chinensis HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
Actinidia36863 Actinidia chinensis HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
EL10Ac8g18907 Beta vulgaris HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 82.1
CSS0028633 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
CBR_g32235 Chara braunii HOM05D001135 ORTHO05D001005 6.4e-06 54.3 36 63.9
DCAR_025540 Daucus carota HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
Dinv24439 Davidia involucrata HOM05D001135 ORTHO05D001005 6.4e-06 54.3 39 61.5
Duzib168G0750 Durio zibethinus HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
Migut.I00627 Erythranthe guttata HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
Lsat_1_v5_gn_4_85040 Lactuca sativa HOM05D001135 ORTHO05D001005 6.4e-06 54.3 44 59.1
Lj7A464T40 Lonicera japonica HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
Nitab4.5_0001036g0160 Nicotiana tabacum HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
Nitab4.5_0006744g0040 Nicotiana tabacum HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
Peaxi162Scf00207g00338 Petunia axillaris HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
Prupe.1G102300 Prunus persica HOM05D001135 ORTHO05D001005 6.4e-06 54.3 65 50.8
Hund26438 Selenicereus undatus HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 82.1
Solyc07g005990.3 Solanum lycopersicum HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
Sopen07g002130 Solanum pennellii HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
PGSC0003DMG400011210 Solanum tuberosum HOM05D001135 ORTHO05D001005 6.4e-06 54.3 34 70.6
SGA_v2.0_scaffold515G52662 Striga asiatica HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
SGA_v2.0_scaffold74G24594 Striga asiatica HOM05D001135 ORTHO05D001005 6.4e-06 54.3 28 85.7
CANSAT56G0644 Cannabis sativa HOM05D001135 ORTHO05D001005 8.3e-06 53.9 34 73.5
ClCG10G012820 Citrullus lanatus HOM05D001135 ORTHO05D001005 8.3e-06 53.9 64 46.9
DCAR_021375 Daucus carota HOM05D001135 ORTHO05D001005 8.3e-06 53.9 65 47.7
Lsat_1_v5_gn_5_88441 Lactuca sativa HOM05D001135 ORTHO05D001005 8.3e-06 53.9 34 70.6
Lalb_Chr04g0264591 Lupinus albus HOM05D001135 ORTHO05D001005 8.3e-06 53.9 28 85.7
MD09G1227700 Malus domestica HOM05D001135 ORTHO05D001005 8.3e-06 53.9 28 85.7
MD17G1226500 Malus domestica HOM05D001135 ORTHO05D001005 8.3e-06 53.9 28 85.7
Manes.04G101000 Manihot esculenta HOM05D001135 ORTHO05D001005 8.3e-06 53.9 48 62.5
Prupe.3G103700 Prunus persica HOM05D001135 ORTHO05D001005 8.3e-06 53.9 28 85.7
Sed0006273 Sechium edule HOM05D001135 ORTHO05D001005 8.3e-06 53.9 65 46.2
SGA_v2.0_scaffold265G46077 Striga asiatica HOM05D001135 ORTHO05D001005 8.3e-06 53.9 34 70.6
HPP92_020614 Vanilla planifolia HOM05D001135 ORTHO05D001005 8.3e-06 53.9 34 67.6


User provided reference genes

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