Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.2e-127 459.9 244 100.0
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 6.9e-91 337.8 216 84.7
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.5e-72 276.2 203 72.4
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.8e-70 270.0 203 73.4
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.8e-70 270.0 203 73.4
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 8.8e-70 267.7 201 70.6
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 7.4e-69 264.6 201 69.2
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 7.4e-69 264.6 201 69.2
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.3e-68 263.8 201 69.7
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.2e-68 263.1 201 68.7
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 3.7e-68 262.3 216 67.1
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 3.7e-68 262.3 202 68.8
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 4.8e-68 261.9 201 69.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-67 260.8 202 69.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.4e-67 260.4 201 70.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.8e-67 260.0 201 70.1
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.1e-67 259.2 201 67.7
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.3e-67 258.5 201 69.7
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 7.0e-67 258.1 201 68.7
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 9.1e-67 257.7 200 67.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 1.5e-66 256.9 202 68.3
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.5e-66 256.9 201 70.1
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.5e-66 256.9 201 68.2
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.0e-66 256.5 203 70.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.6e-66 256.1 216 65.3
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 4.5e-66 255.4 202 68.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.5e-66 255.4 202 69.3
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 4.5e-66 255.4 201 67.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 4.5e-66 255.4 201 70.1
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 5.9e-66 255.0 226 62.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 7.7e-66 254.6 202 67.8
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.7e-65 253.4 200 67.5
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 2.2e-65 253.1 202 67.8
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 2.9e-65 252.7 201 67.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.8e-65 252.3 189 69.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.8e-65 252.3 201 66.2
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.8e-65 252.3 202 67.8
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 5.0e-65 251.9 201 67.7
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.1e-64 250.8 201 67.2
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.1e-64 250.8 201 67.7
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.1e-64 250.8 190 70.0
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.4e-64 250.4 207 67.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.4e-64 250.4 202 67.3
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 3.2e-64 249.2 201 66.2
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 3.2e-64 249.2 201 66.2
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 3.2e-64 249.2 200 66.5
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.2e-64 248.8 191 71.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.2e-64 248.8 202 65.8
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 5.5e-64 248.4 201 65.2
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-63 247.3 206 64.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.2e-63 247.3 206 64.1
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.2e-63 247.3 202 65.3
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.2e-63 247.3 201 67.2
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.7e-63 246.1 200 67.0
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 4.7e-63 245.4 200 65.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.0e-62 244.2 200 66.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.0e-62 244.2 218 65.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 2.3e-62 243.0 200 65.5
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.3e-62 243.0 217 62.7
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 3.9e-62 242.3 201 64.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 3.9e-62 242.3 201 65.2
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 3.9e-62 242.3 203 65.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 3.9e-62 242.3 202 65.8
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 5.2e-62 241.9 212 64.2
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 5.2e-62 241.9 200 65.5
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.1e-61 240.7 201 65.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.0e-61 240.0 217 62.7
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.6e-61 239.6 201 64.7
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 2.6e-61 239.6 204 66.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 4.4e-61 238.8 218 59.2
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 4.4e-61 238.8 217 62.7
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.4e-61 238.8 217 62.7
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.4e-61 238.8 217 62.7
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 5.7e-61 238.4 202 64.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.7e-60 236.9 200 63.0
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 2.2e-60 236.5 202 63.4
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.7e-60 235.7 217 62.2
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.4e-59 233.0 207 63.8
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 4.1e-59 232.3 215 60.0
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.2e-58 230.7 261 52.9
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 3.5e-58 229.2 219 61.2
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.2e-57 226.5 216 59.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.2e-57 226.5 201 60.2
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.9e-57 226.1 216 58.8
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.0e-57 225.3 202 59.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 5.0e-57 225.3 190 65.3
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.5e-56 223.0 191 60.2
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.6e-55 220.3 203 60.6
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 4.7e-55 218.8 201 60.7
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.3e-54 216.5 201 59.7
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 4.0e-54 215.7 165 67.9
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 2.6e-53 213.0 158 70.3
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 9.7e-53 211.1 210 56.2
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.3e-52 210.7 209 56.9
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.3e-52 210.7 209 56.9
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.3e-52 210.7 211 57.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.7e-52 210.3 160 71.2
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 5.3e-51 205.3 172 65.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.2e-50 204.1 201 56.7
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.0e-50 203.4 160 69.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 2.7e-50 203.0 203 58.1
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 3.5e-50 202.6 201 55.2
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.0e-49 201.1 158 69.0
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.0e-49 201.1 169 66.9
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-48 196.8 165 64.2
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.5e-48 196.4 158 64.6
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 4.2e-48 195.7 158 62.7
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 7.5e-45 184.9 220 49.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 3.7e-44 182.6 220 50.5
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.1e-43 181.0 218 52.3
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 5.0e-41 172.2 205 47.3
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.4e-35 153.3 204 48.0
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.2e-34 151.0 216 41.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.8e-31 139.8 181 47.0
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 8.0e-31 138.3 108 70.4
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 8.0e-31 138.3 167 53.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 5.8e-29 132.1 157 52.9
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.3e-28 131.0 222 39.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.6e-26 124.0 226 37.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.6e-26 122.5 246 35.4
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 6.6e-25 118.6 115 64.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.1e-22 111.3 195 34.9
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 7.0e-19 98.6 120 51.7
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.0e-17 94.7 202 36.6
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 7.8e-10 68.6 119 42.0
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 6.6e-09 65.5 117 37.6
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 2.5e-08 63.5 48 72.9


User provided reference genes

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