Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 0.0e+00 1273.1 675 100.0
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 5.3e-258 894.4 655 72.1
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.3e-253 879.8 642 71.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.3e-253 879.0 673 69.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.8e-250 869.4 678 69.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.2e-249 866.7 676 67.2
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 7.7e-249 864.0 679 69.1
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.0e-248 861.3 673 67.0
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.5e-247 859.0 673 67.9
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.3e-244 848.6 654 69.3
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 8.2e-243 844.0 672 68.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 8.5e-240 833.9 674 65.6
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.7e-238 828.9 661 67.6
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 4.4e-236 821.6 671 64.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.3e-232 810.1 654 67.3
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.6e-230 803.1 678 62.4
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.7e-230 802.4 651 63.3
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.0e-229 798.9 717 60.8
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 6.3e-227 791.2 668 62.7
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 8.2e-227 790.8 676 60.8
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.1e-226 790.4 669 63.7
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.4e-226 790.0 681 62.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 7.0e-226 787.7 692 61.7
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.5e-225 785.4 649 64.3
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.3e-224 783.5 664 63.3
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.7e-224 783.1 673 62.4
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.9e-224 782.3 692 61.6
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.1e-223 780.4 664 61.6
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.1e-223 780.4 631 65.3
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.5e-223 780.0 657 61.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.2e-222 776.9 660 62.3
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.2e-222 776.9 692 60.4
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 8.0e-222 774.2 669 61.0
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.0e-221 772.3 660 62.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 8.8e-221 770.8 674 61.6
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.0e-220 769.6 662 61.5
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 7.5e-220 767.7 662 61.3
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.2e-219 766.1 653 62.5
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.2e-219 766.1 665 61.7
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.8e-219 765.8 674 60.7
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.4e-218 761.5 674 61.1
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 7.0e-218 761.1 657 61.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 9.1e-218 760.8 658 60.2
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.0e-217 759.6 655 60.5
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.7e-217 759.2 657 61.0
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.9e-216 755.7 661 62.0
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 5.0e-216 755.0 675 60.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 6.5e-216 754.6 658 61.9
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.7e-214 749.2 671 59.9
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 8.0e-214 747.7 657 60.3
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.3e-213 746.1 638 62.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 3.0e-213 745.7 657 60.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.0e-213 745.3 677 59.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 6.8e-213 744.6 671 59.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 8.8e-213 744.2 673 58.5
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.5e-212 743.4 673 57.9
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 7.5e-212 741.1 664 60.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 7.5e-212 741.1 674 58.8
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-211 740.3 671 58.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 4.9e-211 738.4 671 58.4
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 8.3e-211 737.6 657 60.3
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.2e-209 733.8 655 60.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 3.5e-209 732.3 687 56.6
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 4.5e-209 731.9 659 59.0
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.7e-209 731.1 668 58.8
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 3.8e-208 728.8 672 57.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.9e-207 726.5 665 57.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.3e-207 725.3 594 67.5
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.6e-207 724.9 676 57.5
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-206 722.6 658 60.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 3.6e-206 722.2 679 57.3
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 6.1e-206 721.5 672 57.0
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-204 717.2 671 56.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-204 717.2 671 56.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.1e-202 710.7 652 57.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 5.4e-202 708.4 652 57.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 3.5e-201 705.7 652 57.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.3e-200 703.0 673 56.6
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 6.6e-200 701.4 652 57.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.1e-199 700.7 652 56.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 3.3e-199 699.1 652 57.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 8.0e-198 694.5 652 56.7
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 8.0e-198 694.5 652 56.7
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.3e-197 693.0 652 56.0
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.1e-197 692.6 587 61.0
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 6.8e-197 691.4 653 56.5
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.2e-196 690.6 651 55.5
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-196 689.1 669 57.7
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.4e-196 689.1 675 55.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 7.5e-196 688.0 568 66.2
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.7e-195 686.8 639 58.2
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-195 686.0 642 57.2
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.9e-195 686.0 514 69.6
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 7.0e-194 681.4 642 56.7
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 4.6e-193 678.7 652 55.4
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.3e-192 677.2 667 53.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.7e-192 676.8 673 55.0
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.7e-192 676.8 554 63.0
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.9e-192 675.6 674 54.9
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.6e-192 674.9 540 63.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 7.5e-188 661.4 657 56.3
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.2e-186 656.0 582 61.5
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.4e-173 614.0 614 57.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 6.4e-171 605.1 660 52.1
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.2e-170 602.4 537 57.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.5e-169 599.4 532 58.6
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.3e-167 592.8 654 49.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.4e-164 582.8 671 47.8
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.3e-159 566.2 668 47.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.8e-155 552.7 663 47.5
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 8.2e-142 508.4 394 68.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 9.3e-138 495.0 646 43.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 6.1e-137 492.3 667 43.0
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.1e-136 489.2 396 64.1
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.3e-135 486.5 657 42.9
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.6e-134 484.2 675 41.6
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.6e-132 476.9 644 42.7
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.4e-128 464.5 431 56.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 8.8e-128 461.8 669 42.9
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.6e-119 433.7 385 59.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.6e-83 312.8 248 66.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-78 298.1 383 46.5
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 2.9e-78 297.4 252 64.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.3e-72 277.7 428 42.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 8.3e-70 269.2 444 39.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.8e-65 254.2 234 57.7
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.9e-59 233.8 220 58.2
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.2e-56 223.4 206 60.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 9.9e-55 219.2 383 39.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 9.9e-55 219.2 251 49.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 5.6e-50 203.4 371 38.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 7.6e-47 193.0 292 42.1
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-45 187.6 203 52.7
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.3e-45 186.0 236 50.0
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-40 171.4 306 39.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.8e-35 155.2 164 51.2
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-32 145.2 109 67.9
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.0e-32 142.9 158 53.8
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.7e-30 138.7 254 37.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.9e-30 137.1 187 44.9
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.5e-30 136.7 131 59.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.7e-28 131.3 627 24.7
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 2.3e-27 128.3 110 57.3
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.8e-17 94.7 76 65.8
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 4.8e-17 94.0 96 57.3
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-13 82.0 60 65.0
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-13 81.3 68 55.9
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-12 78.6 169 38.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-12 78.6 132 42.4
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.1e-12 77.0 132 40.9
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-10 72.8 114 44.7
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-10 72.4 68 48.5
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.0e-10 72.0 80 52.5
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.3e-10 71.2 67 55.2
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 5.7e-10 70.5 59 57.6
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 7.4e-10 70.1 88 46.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.2e-09 66.6 69 55.1
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-08 65.9 67 56.7
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 2.0e-07 62.0 52 57.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 3.4e-07 61.2 73 42.5
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 7.7e-07 60.1 71 46.5
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 8.5e-06 56.6 44 59.1


User provided reference genes

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