Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05830 Coffea canephora HOM05D000860 ORTHO05D003230 2.7e-88 328.6 157 100.0
Cc05_g00370 Coffea canephora HOM05D000860 ORTHO05D003230 2.8e-53 212.2 152 72.4
Cc08_g08050 Coffea canephora HOM05D000860 ORTHO05D003230 5.0e-18 95.1 136 44.9
CANSAT35G2042 Cannabis sativa HOM05D000860 ORTHO05D003230 4.9e-13 78.6 129 38.8
Actinidia32603 Actinidia chinensis HOM05D000860 ORTHO05D003230 1.4e-12 77.0 129 43.4
CANSAT54G1862 Cannabis sativa HOM05D000860 ORTHO05D003230 1.4e-12 77.0 139 38.8
CANSAT54G1117 Cannabis sativa HOM05D000860 ORTHO05D003230 3.1e-12 75.9 139 38.1
TAR623G1426 Trochodendron aralioides HOM05D000860 ORTHO05D003230 4.1e-12 75.5 139 38.1
Dinv35418 Davidia involucrata HOM05D000860 ORTHO05D003230 7.0e-12 74.7 139 37.4
Ciclev10011494m.g Citrus clementina HOM05D000860 ORTHO05D003230 1.2e-11 73.9 128 34.4
CSS0032860 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 3.5e-11 72.4 139 40.3
Actinidia29066 Actinidia chinensis HOM05D000860 ORTHO05D003230 4.5e-11 72.0 144 36.8
COL.COLO4_11163 Corchorus olitorius HOM05D000860 ORTHO05D003230 5.9e-11 71.6 149 34.9
MD11G1059300 Malus domestica HOM05D000860 ORTHO05D003230 5.9e-11 71.6 129 37.2
CSS0010257 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 1.0e-10 70.9 138 37.7
Peaxi162Scf00744g00024 Petunia axillaris HOM05D000860 ORTHO05D003230 1.0e-10 70.9 127 40.2
Actinidia11546 Actinidia chinensis HOM05D000860 ORTHO05D003230 1.3e-10 70.5 144 37.5
CiPaw.10G161200 Carya illinoinensis HOM05D000860 ORTHO05D003230 1.3e-10 70.5 131 38.2
Rhsim13G0063300 Rhododendron simsii HOM05D000860 ORTHO05D003230 1.3e-10 70.5 139 38.8
GSVIVG01024625001 Vitis vinifera HOM05D000127 ORTHO05D003230 1.3e-10 70.5 143 35.7
Actinidia20772 Actinidia chinensis HOM05D000860 ORTHO05D003230 2.3e-10 69.7 139 36.7
CSS0046750 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 2.3e-10 69.7 138 37.0
Cc00_g13870 Coffea canephora HOM05D000860 ORTHO05D003230 2.3e-10 69.7 147 34.7
CAN.G1034.32 Capsicum annuum HOM05D000860 ORTHO05D003230 2.9e-10 69.3 142 33.8
HanXRQChr15g0463331 Helianthus annuus HOM05D000860 ORTHO05D003230 3.8e-10 68.9 139 37.4
Nitab4.5_0000047g0160 Nicotiana tabacum HOM05D000860 ORTHO05D003230 3.8e-10 68.9 143 35.0
Oeu026971.2 Olea europaea HOM05D000860 ORTHO05D003230 3.8e-10 68.9 145 38.6
Cc01_g14910 Coffea canephora HOM05D000127 ORTHO05D003230 5.0e-10 68.6 130 37.7
Nitab4.5_0001226g0060 Nicotiana tabacum HOM05D000860 ORTHO05D003230 5.0e-10 68.6 143 35.0
Sc20g0006730 Simmondsia chinensis HOM05D000860 ORTHO05D003230 5.0e-10 68.6 130 35.4
Lalb_Chr20g0114681 Lupinus albus HOM05D000860 ORTHO05D003230 6.6e-10 68.2 138 33.3
PGR031G3676 Punica granatum HOM05D000860 ORTHO05D003230 6.6e-10 68.2 132 34.1
Atru.chr8.2348 Acer truncatum HOM05D000860 ORTHO05D003230 8.6e-10 67.8 129 36.4
Lj2C66T8 Lonicera japonica HOM05D000860 ORTHO05D003230 1.1e-09 67.4 139 36.7
Aqoxy2G00764 Aquilegia oxysepala HOM05D000860 ORTHO05D003230 1.5e-09 67.0 130 37.7
CSS0013654 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 1.5e-09 67.0 139 36.7
CiPaw.09G215900 Carya illinoinensis HOM05D000860 ORTHO05D003230 1.5e-09 67.0 142 34.5
ClCG10G022520 Citrullus lanatus HOM05D000860 ORTHO05D003230 1.5e-09 67.0 129 31.8
Dinv12180 Davidia involucrata HOM05D000860 ORTHO05D003230 1.5e-09 67.0 129 34.1
Dinv28700 Davidia involucrata HOM05D000860 ORTHO05D003230 1.5e-09 67.0 139 36.7
Lj1g0022602 Lotus japonicus HOM05D000860 ORTHO05D003230 1.5e-09 67.0 133 38.3
Rhsim05G0226400 Rhododendron simsii HOM05D000860 ORTHO05D003230 1.9e-09 66.6 140 32.9
Thecc.09G358600 Theobroma cacao HOM05D000860 ORTHO05D003230 2.5e-09 66.2 139 33.8
Cpa.g.sc5.246 Carica papaya HOM05D000860 ORTHO05D003230 3.3e-09 65.9 129 36.4
CsaV3_4G026710 Cucumis sativus L. HOM05D000860 ORTHO05D003230 3.3e-09 65.9 129 34.1
RcHm_v2.0_Chr5g0071801 Rosa chinensis HOM05D000860 ORTHO05D003230 3.3e-09 65.9 129 36.4
Cfa011786 Carpinus fangiana HOM05D000860 ORTHO05D003230 5.6e-09 65.1 96 40.6
Sed0022692 Sechium edule HOM05D000860 ORTHO05D003230 5.6e-09 65.1 87 42.5
vmacro02912 Vaccinium macrocarpon HOM05D000127 ORTHO05D000243 5.6e-09 65.1 87 44.8
MELO3C009125.2 Cucumis melo HOM05D000860 ORTHO05D003230 7.3e-09 64.7 139 30.2
Medtr3g031200 Medicago truncatula HOM05D000860 ORTHO05D003230 7.3e-09 64.7 141 31.9
QL07p033824 Quercus lobata HOM05D000860 ORTHO05D003230 7.3e-09 64.7 133 36.8
Manes.09G112500 Manihot esculenta HOM05D000860 ORTHO05D003230 9.5e-09 64.3 129 31.0
MBI15_g40984_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D003230 1.2e-08 63.9 140 35.7
Phvul.006G074500 Phaseolus vulgaris HOM05D000860 ORTHO05D003230 1.2e-08 63.9 140 32.1
MSTRG.18972 Avicennia marina HOM05D000860 ORTHO05D003230 1.6e-08 63.5 140 35.0
DCAR_028889 Daucus carota HOM05D000860 ORTHO05D003230 1.6e-08 63.5 140 37.1
MBI15_g01649_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D003230 1.6e-08 63.5 140 35.7
Cpa.g.sc2.347 Carica papaya HOM05D000860 ORTHO05D003230 2.1e-08 63.2 140 36.4
ClCG04G006630 Citrullus lanatus HOM05D000860 ORTHO05D003230 2.1e-08 63.2 132 34.1
Glyma.11G163400 Glycine max HOM05D000860 ORTHO05D003230 2.1e-08 63.2 138 33.3
Gohir.D08G220800 Gossypium hirsutum HOM05D000860 ORTHO05D003230 2.1e-08 63.2 129 35.7
Prupe.6G047200 Prunus persica HOM05D000860 ORTHO05D003230 2.1e-08 63.2 79 44.3
Ca_15014_v3 Cicer arietinum L. HOM05D000860 ORTHO05D003230 2.8e-08 62.8 138 32.6
CsaV3_3G033320 Cucumis sativus L. HOM05D000860 ORTHO05D003230 2.8e-08 62.8 139 29.5
Duzib168G0283 Durio zibethinus HOM05D000860 ORTHO05D003230 2.8e-08 62.8 141 34.8
Sed0023108 Sechium edule HOM05D000860 ORTHO05D003230 2.8e-08 62.8 132 31.1
Gohir.A08G203500 Gossypium hirsutum HOM05D000860 ORTHO05D003230 3.6e-08 62.4 129 35.7
Ca_20364_v3 Cicer arietinum L. HOM05D000860 ORTHO05D003230 4.7e-08 62.0 133 32.3
MELO3C026031.2 Cucumis melo HOM05D000860 ORTHO05D003230 4.7e-08 62.0 129 33.3
Aqoxy1G01269 Aquilegia oxysepala HOM05D000860 ORTHO05D003230 6.1e-08 61.6 139 36.0
Cfa017106 Carpinus fangiana HOM05D000860 ORTHO05D003230 6.1e-08 61.6 86 46.5
Medtr4g013290 Medicago truncatula HOM05D000860 ORTHO05D003230 6.1e-08 61.6 143 32.2
Sabra16G0130300 Salix brachista HOM05D000860 ORTHO05D003230 6.1e-08 61.6 140 33.6
Haze_24422 Corylus avellana HOM05D000860 ORTHO05D003230 8.0e-08 61.2 96 40.6
Glyma.18G208202 Glycine max HOM05D000860 ORTHO05D003230 8.0e-08 61.2 130 34.6
Hma1.2p1_0501F.1_g167300 Hydrangea macrophylla HOM05D000860 ORTHO05D003230 8.0e-08 61.2 129 33.3
Lj1P125T29 Lonicera japonica HOM05D000860 ORTHO05D003230 8.0e-08 61.2 134 35.8
Potri.013G153300 Populus trichocarpa HOM05D000860 ORTHO05D003230 8.0e-08 61.2 134 34.3
Lsat_1_v5_gn_9_36341 Lactuca sativa HOM05D000860 ORTHO05D003230 1.0e-07 60.8 141 36.2
Ca_07705_v3 Cicer arietinum L. HOM05D000860 ORTHO05D003230 1.8e-07 60.1 138 33.3
Psat7g249520 Pisum sativum HOM05D000860 ORTHO05D003230 1.8e-07 60.1 139 30.9
Potri.016G128100 Populus trichocarpa HOM05D000860 ORTHO05D003230 1.8e-07 60.1 140 33.6
Phvul.008G091100 Phaseolus vulgaris HOM05D000860 ORTHO05D003230 2.3e-07 59.7 130 33.8
RcHm_v2.0_Chr3g0461501 Rosa chinensis HOM05D000860 ORTHO05D003230 2.3e-07 59.7 129 31.8
Haze_21093 Corylus avellana HOM05D000860 ORTHO05D003230 3.0e-07 59.3 85 42.4
Peaxi162Scf00193g00122 Petunia axillaris HOM05D000860 ORTHO05D003230 3.0e-07 59.3 145 30.3
TWI79G0172 Tripterygium wilfordii HOM05D000860 ORTHO05D003230 3.0e-07 59.3 81 42.0
Dinv25302 Davidia involucrata HOM05D000860 ORTHO05D003230 4.0e-07 58.9 87 40.2
Psat5g152600 Pisum sativum HOM05D000860 ORTHO05D003230 5.2e-07 58.5 79 40.5
FvH4_3g39840 Fragaria vesca HOM05D000860 ORTHO05D003230 6.8e-07 58.2 79 41.8
Lj6g0019825 Lotus japonicus HOM05D000860 ORTHO05D003230 6.8e-07 58.2 141 32.6
TPR.G22168 Trifolium pratense HOM05D000860 ORTHO05D003230 6.8e-07 58.2 130 31.5
VMungo1383G2980 Vigna mungo HOM05D000860 ORTHO05D003230 6.8e-07 58.2 130 33.1
FAN16G1489 Fragaria x ananassa HOM05D000860 ORTHO05D003230 8.9e-07 57.8 79 41.8
TPR.G5258 Trifolium pratense HOM05D000860 ORTHO05D003230 8.9e-07 57.8 141 29.8
FAN14G0660 Fragaria x ananassa HOM05D000860 ORTHO05D003230 1.2e-06 57.4 78 43.6
FAN21G0721 Fragaria x ananassa HOM05D000860 ORTHO05D003230 1.2e-06 57.4 79 41.8
TAR369G0317 Trochodendron aralioides HOM05D000860 ORTHO05D003230 2.0e-06 56.6 107 33.6
FvH4_6g10540 Fragaria vesca HOM05D000860 ORTHO05D003230 2.6e-06 56.2 78 42.3
MD04G1167500 Malus domestica HOM05D000860 ORTHO05D003230 2.6e-06 56.2 134 32.1
PGR004G0739 Punica granatum HOM05D000860 ORTHO05D003230 2.6e-06 56.2 137 29.2
FAN02G3288 Fragaria x ananassa HOM05D000860 ORTHO05D003230 4.4e-06 55.5 78 42.3
VMungo0540G0584 Vigna mungo HOM05D000860 ORTHO05D003230 4.4e-06 55.5 78 38.5
Ah.08g215370 Amaranthus hybridus HOM05D000860 ORTHO05D003230 5.8e-06 55.1 102 35.3
Nitab4.5_0004880g0040 Nicotiana tabacum HOM05D000860 ORTHO05D003230 5.8e-06 55.1 137 31.4
TWI77G0752 Tripterygium wilfordii HOM05D000860 ORTHO05D003230 5.8e-06 55.1 132 28.0
FAN11G3204 Fragaria x ananassa HOM05D000860 ORTHO05D003230 7.5e-06 54.7 79 40.5
Potri.006G105100 Populus trichocarpa HOM05D000860 ORTHO05D003230 7.5e-06 54.7 140 31.4
Psat3g123000 Pisum sativum HOM05D000860 ORTHO05D003230 9.8e-06 54.3 134 33.6
unitig_27.g24876 Utricularia gibba HOM05D000860 ORTHO05D003230 9.8e-06 54.3 140 30.0


User provided reference genes

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