Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 1.3e-50 203.0 119 100.0
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 1.1e-25 120.2 93 67.7
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.6e-24 116.3 86 69.8
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 1.6e-24 116.3 90 70.0
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 2.1e-24 115.9 82 72.0
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 3.5e-24 115.2 126 56.3
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 3.5e-24 115.2 75 77.3
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 4.6e-24 114.8 72 79.2
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 7.9e-24 114.0 87 67.8
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 7.9e-24 114.0 83 74.7
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 1.0e-23 113.6 77 77.9
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 1.0e-23 113.6 84 69.0
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 1.0e-23 113.6 86 68.6
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.0e-23 113.6 86 68.6
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.0e-23 113.6 86 68.6
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 2.3e-23 112.5 72 80.6
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 2.3e-23 112.5 83 74.7
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 5.1e-23 111.3 70 78.6
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 6.7e-23 110.9 89 69.7
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 8.7e-23 110.5 83 72.3
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 1.1e-22 110.2 79 75.9
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 1.1e-22 110.2 76 71.1
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 1.5e-22 109.8 80 71.2
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 1.9e-22 109.4 71 76.1
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 1.9e-22 109.4 76 71.1
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 1.9e-22 109.4 74 71.6
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 2.5e-22 109.0 69 76.8
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 3.3e-22 108.6 93 60.2
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 4.3e-22 108.2 70 78.6
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 4.3e-22 108.2 76 69.7
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 4.3e-22 108.2 76 69.7
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 7.4e-22 107.5 76 72.4
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 7.4e-22 107.5 70 77.1
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 9.7e-22 107.1 90 60.0
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 1.6e-21 106.3 91 60.4
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 1.6e-21 106.3 96 61.5
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 1.6e-21 106.3 70 75.7
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 1.6e-21 106.3 91 56.0
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 3.7e-21 105.1 70 72.9
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 4.8e-21 104.8 100 54.0
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 6.3e-21 104.4 70 75.7
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 6.3e-21 104.4 70 74.3
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 8.2e-21 104.0 75 69.3
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 8.2e-21 104.0 89 61.8
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 8.2e-21 104.0 89 61.8
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 8.2e-21 104.0 89 61.8
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 8.2e-21 104.0 71 76.1
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 8.2e-21 104.0 71 76.1
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 8.2e-21 104.0 83 66.3
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 1.1e-20 103.6 75 74.7
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 1.1e-20 103.6 91 64.8
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 1.4e-20 103.2 83 66.3
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 1.8e-20 102.8 88 61.4
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 3.1e-20 102.1 67 74.6
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 3.1e-20 102.1 91 62.6
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 4.1e-20 101.7 74 71.6
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 4.1e-20 101.7 99 56.6
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 5.3e-20 101.3 97 57.7
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 5.3e-20 101.3 66 74.2
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 1.5e-19 99.8 75 68.0
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 2.0e-19 99.4 129 54.3
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 2.6e-19 99.0 84 64.3
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 4.5e-19 98.2 100 54.0
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 4.5e-19 98.2 70 67.1
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 1.0e-18 97.1 89 58.4
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 1.7e-18 96.3 84 58.3
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 6.5e-18 94.4 84 60.7
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 6.5e-18 94.4 87 59.8
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 2.5e-17 92.4 80 65.0
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 4.2e-17 91.7 65 70.8
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 4.2e-17 91.7 82 62.2
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 4.2e-17 91.7 89 58.4
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 5.5e-17 91.3 63 71.4
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 5.5e-17 91.3 74 64.9
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 2.1e-16 89.4 74 63.5
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 2.7e-16 89.0 68 60.3
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 4.6e-16 88.2 72 65.3
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 6.1e-16 87.8 70 67.1
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 1.0e-15 87.0 76 61.8
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 1.0e-15 87.0 76 61.8
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 3.0e-15 85.5 76 61.8
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 3.9e-15 85.1 79 59.5
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 5.1e-15 84.7 75 60.0
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 5.1e-15 84.7 75 60.0
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 5.1e-15 84.7 86 52.3
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 8.8e-15 84.0 93 53.8
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 1.1e-14 83.6 75 60.0
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 2.5e-14 82.4 79 57.0
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 2.5e-14 82.4 71 62.0
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 2.5e-14 82.4 71 62.0
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 3.3e-14 82.0 44 88.6
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 4.3e-14 81.6 56 75.0
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 5.7e-14 81.3 64 64.1
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 1.3e-13 80.1 71 54.9
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 6.3e-13 77.8 45 80.0
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 1.1e-12 77.0 49 71.4
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 1.1e-12 77.0 48 81.2
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 1.8e-12 76.3 42 85.7
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 1.8e-12 76.3 82 48.8
Actinidia33661 Actinidia chinensis HOM05D007178 ORTHO05D009022 5.3e-12 74.7 72 62.5
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 5.3e-12 74.7 44 77.3
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 1.2e-11 73.6 83 48.2
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 4.5e-11 71.6 66 56.1
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 1.9e-09 66.2 42 71.4
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 5.5e-09 64.7 47 72.3
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 5.5e-09 64.7 42 69.0
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 9.4e-09 63.9 40 70.0
FAN12G1070 Fragaria x ananassa HOM05D007178 ORTHO05D009022 7.9e-08 60.8 36 72.2
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 3.0e-07 58.9 32 81.2
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 5.1e-07 58.2 60 46.7
FAN14G0775 Fragaria x ananassa HOM05D007178 ORTHO05D009022 9.7e-06 53.9 31 77.4


User provided reference genes

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