Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.1e-44 183.0 91 100.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.7e-42 175.6 87 100.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 7.6e-27 123.6 90 75.6
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 2.3e-23 112.1 73 82.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.4e-19 98.2 90 61.1
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 5.0e-18 94.4 89 56.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.5e-18 94.0 92 57.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 5.5e-17 90.9 116 44.8
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 7.2e-17 90.5 85 56.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 9.3e-17 90.1 89 56.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 9.3e-17 90.1 89 53.9
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.2e-16 89.7 89 53.9
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.2e-16 89.7 87 58.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.6e-16 89.4 89 57.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.1e-16 89.0 84 56.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.1e-16 89.0 89 52.8
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.7e-16 88.6 89 52.8
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.7e-16 88.6 89 51.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 4.6e-16 87.8 89 52.8
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.6e-16 87.8 85 54.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.6e-16 87.8 89 56.2
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.9e-16 87.0 89 52.8
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.4e-15 86.3 81 56.8
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-15 85.9 89 52.8
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.8e-15 85.9 92 55.4
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.3e-15 85.5 86 54.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.3e-15 85.5 82 56.1
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 3.0e-15 85.1 91 50.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 3.9e-15 84.7 98 49.0
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.9e-15 84.7 80 57.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 6.7e-15 84.0 89 50.6
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.8e-15 83.6 89 51.7
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 8.8e-15 83.6 81 55.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.8e-15 83.6 81 53.1
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.5e-14 82.8 89 49.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.5e-14 82.8 81 54.3
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.9e-14 82.4 89 49.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-14 82.4 89 51.7
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.5e-14 82.0 81 55.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.5e-14 82.0 81 55.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.5e-14 82.0 89 52.8
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.3e-14 81.6 90 51.1
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.3e-14 81.6 89 47.2
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.3e-14 81.3 89 47.2
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.3e-14 81.3 81 53.1
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.4e-14 80.5 89 50.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 7.4e-14 80.5 81 55.6
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 9.7e-14 80.1 84 51.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.7e-14 80.1 81 54.3
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 9.7e-14 80.1 92 48.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 9.7e-14 80.1 80 53.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.3e-13 79.7 85 49.4
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-13 79.7 81 50.6
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.2e-13 79.0 76 55.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.2e-13 79.0 87 46.0
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.8e-13 78.6 93 53.8
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.7e-13 78.2 81 54.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 4.8e-13 77.8 84 48.8
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.8e-13 77.8 78 51.3
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 6.3e-13 77.4 99 49.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.3e-13 77.4 88 51.1
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 8.2e-13 77.0 81 50.6
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 8.2e-13 77.0 81 51.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.4e-12 76.3 85 47.1
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-12 76.3 81 50.6
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-12 76.3 81 50.6
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.8e-12 75.9 81 53.1
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 4.1e-12 74.7 73 57.5
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 4.1e-12 74.7 83 48.2
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.1e-12 74.7 80 50.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.1e-12 73.6 81 46.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.5e-11 72.8 86 45.3
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.7e-11 70.5 83 44.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.0e-10 70.1 65 63.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.0e-10 70.1 89 42.7
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.9e-10 68.6 85 43.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.5e-10 67.4 85 42.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 6.5e-10 67.4 85 44.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.4e-09 66.2 85 42.4
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 4.2e-09 64.7 80 48.8
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.5e-09 64.3 81 42.0
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.2e-08 63.2 84 42.9
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.1e-08 62.4 81 40.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.7e-08 62.0 76 39.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.7e-08 62.0 84 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.6e-08 61.6 81 39.5
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.1e-08 60.8 81 40.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.3e-07 58.9 81 38.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-06 56.6 89 37.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.0e-06 55.8 85 38.8
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 4.4e-06 54.7 37 64.9


User provided reference genes

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