Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 0.0e+00 1422.9 720 100.0
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 7.9e-244 847.4 728 61.7
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 3.8e-238 828.6 732 60.0
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.4e-235 820.1 729 59.8
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.0e-235 818.9 738 59.5
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.1e-234 817.0 738 59.3
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.9e-229 799.7 740 58.9
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.4e-227 793.5 721 59.8
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 6.7e-227 791.2 726 58.4
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.0e-226 789.6 745 57.9
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 4.8e-225 785.0 720 58.8
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.1e-224 783.9 745 57.4
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 5.9e-223 778.1 745 57.6
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 3.6e-220 768.8 726 56.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.4e-219 766.9 743 56.9
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.6e-218 762.7 737 56.3
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 7.5e-218 761.1 737 56.0
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.8e-217 759.2 739 55.9
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.7e-217 758.8 734 55.9
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.8e-216 756.5 721 55.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.2e-215 753.8 738 55.0
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.5e-214 748.0 724 55.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 4.2e-213 745.3 729 55.6
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.7e-212 742.7 745 56.4
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.4e-211 740.3 737 54.8
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.2e-210 737.3 738 55.0
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.4e-210 735.3 744 55.9
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.3e-209 733.8 732 54.5
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.3e-209 733.8 744 56.0
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.2e-209 733.0 729 54.6
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.8e-209 731.9 732 54.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.3e-209 731.5 730 55.2
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.1e-208 729.2 731 53.4
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 5.4e-208 728.4 682 56.9
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 2.7e-207 726.1 728 54.4
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.5e-207 725.7 731 53.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 3.5e-207 725.7 746 55.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.5e-207 725.7 732 53.7
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 4.5e-207 725.3 732 53.7
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 4.5e-207 725.3 723 55.6
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 7.7e-207 724.5 732 54.5
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.3e-206 723.8 741 54.4
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.7e-206 723.4 728 53.0
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.8e-206 722.2 724 53.7
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.0e-206 721.8 732 54.6
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 5.5e-205 718.4 680 57.2
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.2e-205 718.0 724 53.9
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 9.5e-205 717.6 722 54.7
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.0e-203 714.1 721 53.3
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.3e-201 707.2 760 51.6
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.3e-201 707.2 741 53.2
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 2.8e-201 706.1 729 52.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 8.3e-201 704.5 724 54.1
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 3.1e-200 702.6 717 55.1
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.1e-200 702.6 689 54.0
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 9.2e-200 701.0 723 52.6
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.0e-199 699.9 725 53.1
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.7e-199 699.5 746 52.7
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.3e-198 696.4 724 53.9
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.9e-198 696.0 728 53.8
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 5.0e-198 695.3 726 53.4
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.5e-197 693.7 726 52.1
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.9e-197 693.3 726 51.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.5e-197 693.0 714 53.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 3.3e-197 692.6 726 52.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.1e-196 689.9 724 53.0
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.4e-195 687.2 724 52.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-195 686.4 724 52.8
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.8e-195 684.9 724 53.0
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 4.4e-194 682.2 720 51.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.9e-193 679.5 724 52.9
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.9e-193 679.5 723 52.1
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.4e-192 675.2 724 52.2
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.6e-191 673.7 722 51.4
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.3e-190 669.8 764 48.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 5.4e-184 648.7 721 50.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.2e-183 647.5 607 58.0
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 5.0e-182 642.1 741 49.5
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.9e-181 640.2 731 48.8
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.6e-180 637.1 739 49.5
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.6e-180 637.1 732 49.7
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 5.2e-179 632.1 639 54.6
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.2e-178 630.9 717 48.7
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 7.5e-178 628.2 731 48.4
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.2e-177 626.7 746 47.3
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.9e-177 626.3 637 54.9
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.9e-177 625.5 731 48.2
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.1e-176 624.4 728 47.8
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.4e-176 623.2 728 48.5
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 7.1e-176 621.7 738 47.8
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 7.1e-176 621.7 816 47.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.0e-175 618.6 741 47.9
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 7.8e-175 618.2 774 45.7
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 3.9e-174 615.9 726 47.9
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 5.1e-174 615.5 737 48.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 5.1e-174 615.5 735 47.9
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 6.6e-174 615.1 730 47.5
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.5e-173 614.0 643 53.3
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 5.6e-173 612.1 728 48.6
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.1e-171 607.8 628 53.8
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 8.4e-169 598.2 723 46.5
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 2.4e-168 596.7 637 52.9
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 4.1e-168 595.9 787 45.9
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 4.6e-167 592.4 728 46.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 6.6e-166 588.6 728 45.9
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.9e-165 587.0 644 50.8
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-162 577.8 726 46.3
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-160 571.2 726 45.9
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.1e-160 568.5 721 44.9
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 3.0e-150 536.6 671 45.5
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.1e-147 528.1 693 44.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.2e-146 524.6 766 41.0
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 3.3e-141 506.5 548 51.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.1e-136 491.5 671 42.6
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 3.8e-129 466.5 827 36.3
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.2e-124 450.7 506 48.8
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 4.8e-124 449.5 736 39.0
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.2e-124 448.7 765 38.7
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.5e-121 438.7 761 37.8
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.1e-118 429.5 723 38.6
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.9e-88 331.3 497 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 3.6e-87 327.0 566 37.3
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.7e-84 317.0 887 29.9
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.7e-79 300.1 480 38.5
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.1e-66 258.1 683 29.0
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.6e-63 248.4 445 35.5
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 3.4e-45 187.6 199 49.2
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.3e-43 179.5 127 68.5
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.7e-42 177.9 224 43.8
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.1e-41 173.7 135 60.0
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-38 165.6 229 43.7
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.8e-38 165.2 111 71.2
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.5e-37 162.2 317 34.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.1e-31 141.7 152 52.0
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 4.8e-31 140.6 96 66.7
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.1e-30 139.4 98 68.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.6e-29 134.8 95 64.2
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.6e-26 125.6 140 48.6
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 3.0e-17 94.7 95 52.6
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.2e-13 82.8 73 47.9
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.3e-12 79.3 262 30.5
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.9e-11 75.5 528 23.9
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.6e-10 72.4 222 29.3
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 1.8e-09 68.9 162 31.5
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 2.5e-08 65.1 161 30.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 7.4e-08 63.5 275 28.4
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 1.3e-07 62.8 160 34.4
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 2.2e-07 62.0 42 73.8
Peaxi162Scf00157g00417 Petunia axillaris HOM05D001312 ORTHO05D001832 4.8e-07 60.8 240 25.8
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 1.4e-06 59.3 283 25.8
Solyc06g074640.2 Solanum lycopersicum HOM05D001312 ORTHO05D001832 1.8e-06 58.9 280 26.4
Sopen06g031060 Solanum pennellii HOM05D001312 ORTHO05D001832 2.4e-06 58.5 280 26.4
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 3.1e-06 58.2 160 31.9
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 3.1e-06 58.2 56 53.6
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 3.1e-06 58.2 220 28.6
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 3.1e-06 58.2 159 30.8
CDE02G1918 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 4.1e-06 57.8 184 29.3
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 4.1e-06 57.8 71 46.5
TPR.G32362 Trifolium pratense HOM05D001312 ORTHO05D001832 4.1e-06 57.8 177 30.5
ATR0721G002 Amborella trichopoda HOM05D001312 ORTHO05D001832 6.9e-06 57.0 221 29.4
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 6.9e-06 57.0 56 53.6
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 6.9e-06 57.0 71 42.3
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 6.9e-06 57.0 71 40.8
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 9.1e-06 56.6 71 42.3


User provided reference genes

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