Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 6.5e-114 414.1 210 100.0
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 2.1e-59 233.0 213 66.2
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 2.1e-48 196.4 213 55.4
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 1.4e-47 193.7 213 54.5
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 9.0e-47 191.0 213 54.0
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.2e-46 190.7 213 54.9
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 1.5e-46 190.3 214 54.2
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 1.5e-46 190.3 215 54.0
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.0e-46 189.9 213 54.0
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 2.6e-46 189.5 214 53.7
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 4.5e-46 188.7 222 51.4
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 5.8e-46 188.3 213 54.5
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 5.8e-46 188.3 216 54.6
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 5.8e-46 188.3 215 52.1
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 7.6e-46 188.0 213 54.0
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 7.6e-46 188.0 213 54.0
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 1.3e-45 187.2 214 52.8
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 1.7e-45 186.8 213 53.5
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 1.7e-45 186.8 213 53.5
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 1.7e-45 186.8 213 52.1
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 2.2e-45 186.4 213 54.0
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 2.2e-45 186.4 213 51.6
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 2.2e-45 186.4 214 51.9
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 2.9e-45 186.0 215 53.5
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.8e-45 185.7 216 55.1
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 3.8e-45 185.7 214 52.8
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 3.8e-45 185.7 213 52.6
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 4.9e-45 185.3 216 55.1
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 4.9e-45 185.3 213 53.1
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 6.4e-45 184.9 213 51.2
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 8.4e-45 184.5 213 52.6
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 8.4e-45 184.5 213 54.0
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 1.1e-44 184.1 213 53.5
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 1.9e-44 183.3 215 53.5
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 2.4e-44 183.0 213 51.6
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 4.2e-44 182.2 210 51.9
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 4.2e-44 182.2 215 52.6
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 5.4e-44 181.8 212 51.9
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 5.4e-44 181.8 215 53.0
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 5.4e-44 181.8 214 53.7
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 5.4e-44 181.8 212 51.4
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 5.4e-44 181.8 213 51.6
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 9.3e-44 181.0 215 52.6
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 9.3e-44 181.0 211 52.1
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 9.3e-44 181.0 213 52.6
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 1.2e-43 180.6 213 52.1
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 1.6e-43 180.3 213 51.6
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.6e-43 180.3 214 51.9
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 1.6e-43 180.3 213 51.6
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 2.1e-43 179.9 213 53.5
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 2.7e-43 179.5 214 51.4
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 3.5e-43 179.1 214 51.4
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 3.5e-43 179.1 213 51.2
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 7.9e-43 177.9 213 49.8
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 7.9e-43 177.9 213 54.0
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 7.9e-43 177.9 213 51.2
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.0e-42 177.6 214 50.5
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 1.0e-42 177.6 231 49.8
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 1.3e-42 177.2 200 53.5
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 2.3e-42 176.4 213 50.2
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 3.0e-42 176.0 213 51.2
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 3.9e-42 175.6 211 49.3
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 6.7e-42 174.9 213 50.2
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.1e-41 174.1 214 50.0
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 1.9e-41 173.3 208 52.9
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 2.5e-41 172.9 214 49.5
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 3.3e-41 172.6 213 49.8
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.6e-41 171.8 210 49.5
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 7.4e-41 171.4 213 49.3
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 9.6e-41 171.0 213 48.8
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.6e-40 170.2 208 48.6
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 1.1e-39 167.5 215 50.2
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 1.4e-39 167.2 213 50.2
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 2.4e-39 166.4 216 50.5
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 9.0e-39 164.5 249 44.6
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 1.2e-38 164.1 213 48.8
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 1.2e-38 164.1 213 48.8
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 1.2e-38 164.1 215 48.4
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 2.0e-38 163.3 213 48.8
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 2.0e-38 163.3 213 48.4
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 2.0e-38 163.3 213 48.4
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 3.4e-38 162.5 213 47.9
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 3.4e-38 162.5 215 49.3
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 7.6e-38 161.4 213 47.4
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.3e-37 160.6 187 52.4
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 1.7e-37 160.2 215 47.4
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 1.7e-37 160.2 212 47.2
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 2.2e-37 159.8 213 47.9
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 4.9e-37 158.7 213 47.9
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 4.9e-37 158.7 213 47.4
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 8.4e-37 157.9 215 48.4
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 8.4e-37 157.9 213 46.0
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 1.4e-36 157.1 216 46.3
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 5.5e-36 155.2 215 48.8
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 9.3e-36 154.5 196 51.5
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 1.6e-35 153.7 208 47.1
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 4.6e-35 152.1 213 46.0
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 1.0e-34 151.0 214 46.7
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 6.7e-34 148.3 215 45.6
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 1.1e-33 147.5 214 43.5
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 1.5e-33 147.1 212 44.8
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 1.6e-32 143.7 209 45.0
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 3.7e-32 142.5 199 48.7
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 1.1e-31 141.0 216 44.9
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 1.4e-31 140.6 210 45.2
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 2.6e-30 136.3 212 43.9
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 4.5e-30 135.6 174 51.7
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 1.9e-28 130.2 198 45.5
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 2.5e-28 129.8 190 46.8
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 4.2e-28 129.0 214 41.1
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.9e-27 124.8 233 39.1
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 1.0e-26 124.4 220 42.7
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 8.7e-26 121.3 214 42.1
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.1e-25 120.9 214 41.1
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.1e-23 112.8 211 40.3
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.5e-22 109.0 217 41.5
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 4.5e-22 109.0 214 40.2
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 1.7e-21 107.1 77 67.5
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.7e-21 107.1 213 38.0
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 2.2e-21 106.7 212 42.5
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.9e-20 103.6 87 69.0
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 4.2e-20 102.4 158 48.7
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 5.5e-20 102.1 212 42.0
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 4.6e-19 99.0 190 40.5
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 4.6e-19 99.0 88 52.3
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 6.1e-19 98.6 81 70.4
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 1.4e-18 97.4 87 65.5
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 3.0e-18 96.3 87 65.5
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 3.9e-18 95.9 57 87.7
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.5e-17 94.0 202 36.6
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 2.0e-17 93.6 58 84.5
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 2.0e-17 93.6 58 84.5
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 7.4e-17 91.7 58 81.0
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.2e-16 90.1 143 46.9
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 3.7e-16 89.4 63 74.6
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 5.3e-15 85.5 87 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 2.6e-14 83.2 214 36.4
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 3.4e-14 82.8 58 75.9
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 2.2e-13 80.1 206 33.5
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 7.2e-12 75.1 96 46.9
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.6e-11 73.9 57 66.7
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.6e-11 73.9 57 66.7
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 1.8e-10 70.5 58 65.5
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 3.9e-10 69.3 66 62.1
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-09 67.8 58 63.8
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 1.5e-09 67.4 45 80.0
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.4e-09 65.9 43 76.7
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 1.3e-08 64.3 44 68.2
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 1.7e-08 63.9 41 73.2
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.7e-08 62.8 99 45.5
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 2.4e-07 60.1 164 31.1
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 2.4e-07 60.1 36 86.1
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 7.0e-07 58.5 36 80.6
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 4.5e-06 55.8 73 38.4
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 7.7e-06 55.1 76 48.7


User provided reference genes

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