Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 3.3e-100 368.2 171 100.0
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.4e-52 208.4 179 59.2
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 1.7e-51 206.5 170 57.6
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 2.2e-51 206.1 168 58.3
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 2.2e-51 206.1 168 59.5
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 2.9e-51 205.7 170 57.6
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 2.9e-51 205.7 168 59.5
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 4.9e-51 204.9 166 60.2
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 6.4e-51 204.5 169 59.2
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 8.3e-51 204.1 170 56.5
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.1e-50 203.8 169 58.0
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 1.4e-50 203.4 169 60.9
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 1.4e-50 203.4 170 57.6
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 1.4e-50 203.4 170 57.6
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 1.9e-50 203.0 169 60.9
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 1.9e-50 203.0 169 60.9
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 3.2e-50 202.2 170 57.1
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 3.2e-50 202.2 165 57.0
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.2e-50 202.2 168 57.7
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 4.1e-50 201.8 171 57.9
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 7.1e-50 201.1 169 57.4
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 9.2e-50 200.7 169 60.4
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 9.2e-50 200.7 169 60.4
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 9.2e-50 200.7 168 58.9
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 9.2e-50 200.7 169 56.8
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 2.1e-49 199.5 170 57.6
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 2.1e-49 199.5 187 52.4
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 3.5e-49 198.7 170 55.3
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 3.5e-49 198.7 171 56.7
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 3.5e-49 198.7 166 57.8
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 4.6e-49 198.4 170 57.1
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 6.0e-49 198.0 168 57.1
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 7.8e-49 197.6 169 56.2
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 7.8e-49 197.6 169 58.0
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.0e-48 197.2 170 56.5
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.3e-48 196.8 170 54.7
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.7e-48 196.4 170 55.3
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.7e-48 196.4 168 57.1
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 3.0e-48 195.7 167 58.1
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 3.9e-48 195.3 169 57.4
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 3.9e-48 195.3 169 57.4
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 3.9e-48 195.3 170 55.9
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.9e-48 195.3 168 57.1
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 3.9e-48 195.3 172 56.4
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.9e-48 195.3 168 54.8
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 5.1e-48 194.9 171 55.6
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 6.6e-48 194.5 170 57.6
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 6.6e-48 194.5 170 57.1
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 8.6e-48 194.1 168 54.2
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 8.6e-48 194.1 169 56.8
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 8.6e-48 194.1 171 55.6
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 8.6e-48 194.1 172 57.6
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 1.1e-47 193.7 170 56.5
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 1.5e-47 193.4 171 57.3
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.9e-47 193.0 169 56.8
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 1.9e-47 193.0 169 56.2
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 1.9e-47 193.0 169 56.2
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 1.9e-47 193.0 171 55.6
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 2.5e-47 192.6 172 55.2
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.3e-47 192.2 169 55.6
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.3e-47 191.8 168 56.0
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 5.6e-47 191.4 167 56.9
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 7.3e-47 191.0 168 55.4
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 7.3e-47 191.0 170 56.5
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 7.3e-47 191.0 166 56.0
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 9.6e-47 190.7 168 56.0
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 9.6e-47 190.7 166 55.4
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 9.6e-47 190.7 170 56.5
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.2e-46 190.3 169 56.2
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 1.2e-46 190.3 168 56.0
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.2e-46 190.3 169 55.0
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.2e-46 190.3 165 55.8
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.6e-46 189.9 171 53.8
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.1e-46 189.5 171 53.8
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.1e-46 189.5 171 53.8
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 2.1e-46 189.5 169 56.8
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 2.8e-46 189.1 169 55.0
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 2.8e-46 189.1 170 54.1
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 3.6e-46 188.7 154 57.8
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 4.7e-46 188.3 171 55.6
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 4.7e-46 188.3 166 56.0
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 8.1e-46 187.6 170 57.1
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 8.1e-46 187.6 172 53.5
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 8.1e-46 187.6 171 54.4
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.1e-45 187.2 171 52.6
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.8e-45 186.4 171 52.6
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 2.4e-45 186.0 170 54.1
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 3.1e-45 185.7 170 54.7
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 6.8e-45 184.5 170 54.1
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 1.5e-44 183.3 166 55.4
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 8.4e-43 177.6 168 52.4
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 8.4e-43 177.6 161 52.8
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.1e-42 177.2 215 45.1
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.4e-42 176.8 144 59.7
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 9.3e-42 174.1 250 42.4
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.2e-41 173.7 213 44.6
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 2.1e-41 172.9 170 51.2
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 4.6e-41 171.8 150 58.0
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 6.6e-40 167.9 155 55.5
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 4.3e-39 165.2 165 52.7
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 1.6e-38 163.3 127 60.6
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 1.6e-38 163.3 165 51.5
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 4.8e-38 161.8 111 66.7
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 6.2e-38 161.4 126 58.7
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 6.2e-38 161.4 111 65.8
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.4e-37 160.2 165 47.9
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 2.4e-37 159.5 111 63.1
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 5.3e-37 158.3 171 48.5
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 5.3e-37 158.3 165 49.7
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.2e-36 157.1 112 61.6
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 2.6e-36 156.0 171 47.4
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 2.6e-36 156.0 114 63.2
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 2.9e-35 152.5 111 64.9
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 6.4e-35 151.4 111 60.4
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.4e-34 149.4 109 59.6
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 7.1e-34 147.9 152 49.3
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 7.1e-34 147.9 107 61.7
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.2e-33 147.1 112 60.7
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 1.9e-31 139.8 155 48.4
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.8e-30 136.0 154 44.2
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 6.2e-30 134.8 151 44.4
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 9.9e-28 127.5 98 64.3
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.2e-25 120.6 106 51.9
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 2.1e-25 119.8 106 51.9
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 6.7e-24 114.8 71 64.8
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 7.4e-23 111.3 68 67.6
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.8e-21 106.7 230 31.3
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 2.4e-21 106.3 124 43.5
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 2.2e-19 99.8 117 41.9
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 2.3e-16 89.7 103 45.6
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 8.7e-16 87.8 166 33.1
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 7.4e-15 84.7 89 49.4
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 6.9e-13 78.2 85 49.4
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 3.4e-12 75.9 60 58.3
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 1.6e-09 67.0 166 29.5
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 1.8e-08 63.5 81 40.7


User provided reference genes

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