Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.8e-81 305.8 151 100.0
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 4.3e-67 258.1 153 87.6
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 3.7e-50 201.8 148 69.6
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 1.7e-47 193.0 150 66.7
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.5e-46 188.0 148 66.2
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 2.1e-45 186.0 150 64.0
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 6.0e-45 184.5 146 66.4
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 3.0e-44 182.2 149 63.1
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 3.9e-44 181.8 149 63.1
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 6.7e-44 181.0 152 65.8
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 4.3e-43 178.3 148 64.2
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 1.4e-41 173.3 155 60.6
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 1.4e-41 173.3 154 59.1
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 2.4e-41 172.6 147 62.6
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 3.1e-41 172.2 147 63.3
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 6.9e-41 171.0 152 63.2
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 6.9e-41 171.0 152 59.9
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 3.4e-40 168.7 144 63.2
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.3e-39 166.8 147 60.5
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 1.3e-39 166.8 154 57.1
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.7e-39 166.4 150 58.7
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.7e-39 166.4 146 58.2
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 5.0e-39 164.9 146 59.6
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 8.5e-39 164.1 146 58.9
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-38 163.7 147 59.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.9e-38 162.9 148 57.4
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 2.5e-38 162.5 147 61.2
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 5.5e-38 161.4 153 55.6
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 5.5e-38 161.4 148 56.8
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 1.6e-37 159.8 148 56.8
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 3.6e-37 158.7 147 61.9
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.6e-37 158.3 152 58.6
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 4.6e-37 158.3 152 58.6
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 4.6e-37 158.3 145 59.3
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 4.6e-37 158.3 149 60.4
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 7.9e-37 157.5 149 61.1
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.0e-36 157.1 149 59.1
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 1.0e-36 157.1 145 57.2
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 1.3e-36 156.8 147 60.5
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 1.3e-36 156.8 142 59.9
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.8e-36 156.4 147 59.2
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.8e-36 156.4 142 59.2
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 3.0e-36 155.6 150 58.7
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 3.9e-36 155.2 151 57.0
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 5.1e-36 154.8 149 57.0
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 1.1e-35 153.7 146 54.8
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 1.5e-35 153.3 149 57.0
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.9e-35 152.9 141 61.0
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 2.5e-35 152.5 148 56.8
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 7.4e-35 151.0 149 55.0
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 7.4e-35 151.0 149 57.7
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 9.7e-35 150.6 149 54.4
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 2.2e-34 149.4 149 57.0
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 2.8e-34 149.1 147 57.1
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 2.8e-34 149.1 149 53.0
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.3e-34 147.9 149 53.7
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.4e-33 146.7 147 55.1
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.8e-33 146.4 149 54.4
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 6.9e-33 144.4 150 54.7
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.0e-32 142.9 160 50.6
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 4.5e-32 141.7 143 52.4
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.5e-32 141.7 118 66.9
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 7.7e-32 141.0 146 53.4
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.0e-31 140.6 143 53.1
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.3e-31 140.2 143 53.1
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.3e-31 140.2 143 53.1
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.7e-31 139.8 142 53.5
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 6.5e-31 137.9 153 49.7
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 8.5e-31 137.5 150 50.7
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.1e-30 137.1 123 55.3
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.5e-30 136.0 146 50.7
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 4.2e-30 135.2 140 57.1
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 5.5e-30 134.8 134 53.7
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 9.4e-30 134.0 144 53.5
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.2e-29 133.7 148 50.7
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 2.1e-29 132.9 144 52.1
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.0e-28 129.0 144 50.7
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 3.9e-28 128.6 144 51.4
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 5.1e-28 128.3 144 51.4
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 5.1e-28 128.3 146 51.4
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 6.7e-28 127.9 106 60.4
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.5e-27 126.7 126 54.0
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 7.4e-27 124.4 145 49.7
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 9.7e-27 124.0 148 43.9
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 2.2e-26 122.9 144 50.0
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 4.8e-26 121.7 146 50.0
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 4.8e-26 121.7 150 48.7
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 6.3e-26 121.3 157 45.9
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 8.2e-26 120.9 147 50.3
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 1.8e-25 119.8 146 49.3
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.8e-25 119.8 137 52.6
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.8e-25 119.8 105 61.0
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 3.1e-25 119.0 145 50.3
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 5.3e-25 118.2 148 50.7
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 9.1e-25 117.5 145 49.7
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.5e-24 116.7 145 49.7
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 1.5e-24 116.7 150 48.0
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 3.4e-24 115.5 101 61.4
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 1.0e-23 114.0 152 45.4
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.7e-23 113.2 141 50.4
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 2.2e-23 112.8 144 45.8
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.4e-22 110.2 125 48.8
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 6.1e-21 104.8 83 62.7
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.1e-21 104.8 112 50.0
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.1e-21 104.8 112 50.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.4e-20 103.6 105 51.4
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.7e-19 98.2 82 62.2
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.7e-19 98.2 82 62.2
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 1.3e-18 97.1 136 46.3
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 2.4e-17 92.8 131 42.7
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 7.0e-17 91.3 142 44.4
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 1.2e-16 90.5 87 57.5
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.1e-14 84.0 146 41.1
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.4e-12 77.0 143 39.9
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.0e-11 73.2 137 39.4
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 7.5e-11 71.2 103 46.6
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 7.5e-11 71.2 63 63.5
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 9.7e-11 70.9 105 41.0
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 6.3e-10 68.2 82 46.3
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 4.1e-09 65.5 103 44.7
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.2e-08 63.9 103 43.7
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.2e-08 63.9 103 43.7
Oeu023852.1 Olea europaea HOM05D006043 ORTHO05D007309 5.0e-07 58.5 112 37.5
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 8.5e-07 57.8 76 46.1
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 3.2e-06 55.8 107 37.4


User provided reference genes

Program Settings