Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 4.0e-63 244.6 124 100.0
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 6.9e-55 217.2 127 90.6
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 6.1e-35 151.0 109 78.0
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.9e-29 132.1 109 67.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.9e-29 132.1 109 67.9
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 6.5e-29 131.0 109 66.1
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.5e-28 129.8 109 67.0
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.5e-28 129.0 112 67.0
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.5e-28 129.0 112 67.0
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-28 129.0 109 67.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.2e-28 128.3 108 64.8
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 7.2e-28 127.5 109 67.9
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.2e-27 126.7 109 66.1
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.6e-27 126.3 109 65.1
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.7e-27 125.6 108 66.7
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.7e-27 125.6 108 66.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 3.6e-27 125.2 109 64.2
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 6.1e-27 124.4 109 65.1
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 6.1e-27 124.4 109 64.2
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.0e-26 123.6 109 64.2
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.0e-26 123.6 109 64.2
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.4e-26 123.2 108 65.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.4e-26 123.2 109 64.2
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.4e-26 123.2 109 64.2
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.8e-26 122.9 108 63.0
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 4.0e-26 121.7 109 62.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 4.0e-26 121.7 108 63.0
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 4.0e-26 121.7 108 63.9
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 4.0e-26 121.7 117 59.8
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 5.2e-26 121.3 108 63.0
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 5.2e-26 121.3 109 63.3
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 6.7e-26 120.9 109 61.5
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 6.7e-26 120.9 109 63.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 6.7e-26 120.9 109 63.3
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 6.7e-26 120.9 109 64.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 8.8e-26 120.6 109 63.3
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.1e-25 120.2 108 62.0
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.5e-25 119.8 108 62.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.5e-25 119.8 108 62.0
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.5e-25 119.8 108 62.0
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.5e-25 119.8 108 62.0
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.0e-25 119.4 109 62.4
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.0e-25 119.4 109 61.5
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.0e-25 119.4 108 61.1
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.0e-25 119.4 108 62.0
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.3e-25 118.6 109 61.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.3e-25 118.6 108 62.0
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 4.4e-25 118.2 108 62.0
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 7.5e-25 117.5 108 63.0
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 7.5e-25 117.5 108 60.2
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 7.5e-25 117.5 108 60.2
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 9.7e-25 117.1 108 60.2
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.3e-24 116.7 108 62.0
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.3e-24 116.7 108 61.1
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.3e-24 116.7 109 59.6
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.2e-24 115.9 108 61.1
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.2e-24 115.9 108 61.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.7e-24 115.2 108 61.1
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 4.8e-24 114.8 109 60.6
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 4.8e-24 114.8 108 59.3
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 6.3e-24 114.4 109 60.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.3e-24 114.4 108 60.2
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 8.2e-24 114.0 109 60.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.2e-24 114.0 114 60.5
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.1e-23 113.6 107 61.7
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.1e-23 113.6 108 60.2
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.8e-23 112.8 121 55.4
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.8e-23 112.8 114 59.6
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.4e-23 112.5 108 58.3
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.1e-23 112.1 108 58.3
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.1e-23 112.1 108 59.3
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 3.1e-23 112.1 105 59.0
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 3.1e-23 112.1 110 60.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.1e-23 112.1 108 59.3
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 4.1e-23 111.7 109 57.8
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.1e-23 111.7 111 58.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 4.1e-23 111.7 108 57.4
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 7.0e-23 110.9 108 58.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 9.1e-23 110.5 108 57.4
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 9.1e-23 110.5 108 57.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-22 109.8 114 59.6
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.7e-22 109.0 114 58.8
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 2.7e-22 109.0 107 57.9
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 3.5e-22 108.6 108 58.3
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 3.5e-22 108.6 108 58.3
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.5e-22 108.2 124 55.6
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.5e-22 108.2 114 58.8
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.9e-22 107.8 124 54.8
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.7e-22 107.5 115 59.1
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 7.7e-22 107.5 105 58.1
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.9e-21 105.5 108 57.4
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 5.0e-21 104.8 108 56.5
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.0e-21 104.8 110 53.6
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.0e-21 104.8 114 57.9
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.1e-20 103.6 100 58.0
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 4.2e-20 101.7 122 53.3
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.1e-19 99.4 102 57.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 3.6e-19 98.6 97 59.8
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 1.5e-17 93.2 109 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 2.0e-17 92.8 107 50.5
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.2e-16 89.4 84 61.9
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.4e-15 86.7 95 54.7
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.4e-15 86.7 113 48.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.4e-15 84.7 83 59.0
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 5.4e-15 84.7 109 48.6
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 7.0e-15 84.3 84 58.3
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 9.1e-15 84.0 84 57.1
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 9.1e-15 84.0 108 48.1
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.0e-13 80.5 84 54.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.2e-13 79.3 84 56.0
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 2.9e-13 79.0 84 53.6
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 6.5e-13 77.8 103 46.6
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.5e-12 75.9 89 51.7
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 4.2e-12 75.1 108 44.4
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 8.0e-11 70.9 105 45.7
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 8.0e-11 70.9 105 45.7
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-08 62.4 47 70.2
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.9e-08 61.6 41 68.3
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 4.5e-06 55.1 87 42.5


User provided reference genes

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