Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 2.6e-83 312.0 157 100.0
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 1.6e-35 153.3 155 57.4
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 7.7e-35 151.0 155 56.8
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 3.8e-34 148.7 156 56.4
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 5.0e-34 148.3 160 56.9
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.5e-33 146.7 153 56.9
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 1.9e-33 146.4 141 58.2
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 1.6e-32 143.3 159 52.8
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 7.0e-28 127.9 148 51.4
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.0e-23 114.0 128 53.1
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 7.5e-22 107.8 152 46.7
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 2.2e-21 106.3 139 46.0
Oeu027256.1 Olea europaea HOM05D006473 ORTHO05D008108 2.8e-21 105.9 120 54.2
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 4.8e-21 105.1 159 42.8
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 4.8e-21 105.1 159 42.8
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 3.1e-20 102.4 139 46.0
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 5.4e-20 101.7 174 41.4
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 9.1e-20 100.9 145 41.4
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 1.3e-18 97.1 145 40.7
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 1.7e-18 96.7 147 42.2
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 1.9e-17 93.2 151 39.7
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 4.2e-17 92.0 159 38.4
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 5.5e-17 91.7 141 44.0
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 7.2e-17 91.3 152 45.4
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 9.5e-17 90.9 148 40.5
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 9.5e-17 90.9 135 44.4
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 1.2e-16 90.5 159 40.9
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 1.6e-16 90.1 149 42.3
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 2.1e-16 89.7 146 42.5
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 2.1e-16 89.7 151 36.4
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 2.8e-16 89.4 155 38.1
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 3.6e-16 89.0 155 37.4
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 6.1e-16 88.2 177 38.4
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 6.1e-16 88.2 144 39.6
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 6.1e-16 88.2 160 41.9
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 8.0e-16 87.8 148 42.6
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 8.0e-16 87.8 176 38.6
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 8.0e-16 87.8 159 42.1
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 1.0e-15 87.4 155 38.1
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 1.4e-15 87.0 147 42.2
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.8e-15 86.7 153 43.1
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 2.3e-15 86.3 153 39.2
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 3.0e-15 85.9 155 37.4
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 3.0e-15 85.9 155 37.4
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 3.0e-15 85.9 159 41.5
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 4.0e-15 85.5 141 41.8
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 4.0e-15 85.5 155 36.8
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 4.0e-15 85.5 155 37.4
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 4.0e-15 85.5 140 40.7
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 5.2e-15 85.1 155 37.4
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 5.2e-15 85.1 155 37.4
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 5.2e-15 85.1 157 41.4
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 5.2e-15 85.1 155 39.4
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 8.9e-15 84.3 163 36.2
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 8.9e-15 84.3 154 42.9
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 1.2e-14 84.0 143 40.6
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 1.5e-14 83.6 159 40.3
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 1.5e-14 83.6 149 37.6
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 1.5e-14 83.6 156 38.5
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 1.5e-14 83.6 158 39.2
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 2.0e-14 83.2 157 40.1
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 2.6e-14 82.8 141 39.7
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 2.6e-14 82.8 167 39.5
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 2.6e-14 82.8 167 39.5
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 3.4e-14 82.4 163 40.5
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 3.4e-14 82.4 143 42.0
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 3.4e-14 82.4 167 40.7
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 4.4e-14 82.0 158 38.6
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 7.5e-14 81.3 149 41.6
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 9.8e-14 80.9 155 37.4
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 9.8e-14 80.9 155 37.4
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 9.8e-14 80.9 157 33.8
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 1.3e-13 80.5 156 39.7
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 1.7e-13 80.1 155 36.8
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 1.7e-13 80.1 155 36.8
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 1.7e-13 80.1 145 39.3
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 1.7e-13 80.1 146 39.7
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.7e-13 80.1 150 40.0
Nitab4.5_0000019g0110 Nicotiana tabacum HOM05D006473 ORTHO05D008108 2.2e-13 79.7 134 42.5
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 3.7e-13 79.0 147 38.8
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 3.7e-13 79.0 171 36.8
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 3.7e-13 79.0 157 38.9
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 4.9e-13 78.6 152 38.8
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 4.9e-13 78.6 159 39.0
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 6.3e-13 78.2 151 37.1
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 1.4e-12 77.0 144 41.0
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 1.4e-12 77.0 145 35.2
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 1.8e-12 76.6 157 37.6
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 1.8e-12 76.6 147 40.1
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 2.4e-12 76.3 134 39.6
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 3.1e-12 75.9 107 43.0
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 4.1e-12 75.5 148 39.2
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 7.0e-12 74.7 159 37.1
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 9.2e-12 74.3 153 35.3
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 9.2e-12 74.3 149 41.6
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 9.2e-12 74.3 147 40.8
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 9.2e-12 74.3 156 35.9
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 1.6e-11 73.6 162 35.2
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 2.0e-11 73.2 133 38.3
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 2.0e-11 73.2 158 35.4
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 2.0e-11 73.2 143 37.8
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 2.0e-11 73.2 163 36.8
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 2.9e-10 69.3 152 34.2
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 6.6e-10 68.2 162 33.3
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 8.6e-10 67.8 152 32.2
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 1.5e-09 67.0 147 34.7
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 2.5e-09 66.2 134 39.6
Dinv40839 Davidia involucrata HOM05D006473 ORTHO05D008108 2.5e-09 66.2 73 50.7
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 2.8e-08 62.8 151 33.8
Oeu036758.1 Olea europaea HOM05D006473 ORTHO05D008108 6.1e-08 61.6 152 32.9
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 8.0e-08 61.2 137 36.5
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 1.4e-07 60.5 79 44.3
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 3.0e-07 59.3 151 34.4
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 3.0e-07 59.3 144 33.3
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 4.0e-07 58.9 82 42.7
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 8.9e-07 57.8 157 36.9
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 9.8e-06 54.3 102 43.1


User provided reference genes

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