Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.6e-311 1071.2 541 100.0
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 2.6e-223 778.9 549 70.3
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 7.6e-223 777.3 543 70.5
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.1e-217 759.2 546 69.2
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 5.2e-216 754.6 528 72.2
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.4e-213 746.5 551 67.7
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 4.2e-213 745.0 558 67.7
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 5.4e-213 744.6 557 67.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 7.3e-210 734.2 539 67.3
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 2.8e-209 732.3 540 67.2
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.8e-208 729.6 550 65.5
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 2.9e-206 722.2 554 66.2
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 4.6e-204 714.9 541 66.4
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.5e-202 709.1 555 64.9
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 9.6e-202 707.2 523 67.7
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.1e-201 706.1 525 67.2
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.8e-200 703.0 506 71.1
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.2e-199 700.3 542 64.8
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 2.0e-199 699.5 525 67.0
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 2.2e-198 696.0 523 66.9
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 6.4e-198 694.5 548 63.5
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.1e-197 693.7 541 65.2
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.9e-197 693.0 548 63.3
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.2e-197 692.2 514 66.9
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.2e-196 690.3 541 64.9
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.0e-196 688.0 548 63.0
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 1.0e-195 687.2 531 64.6
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 3.3e-194 682.2 502 68.9
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 4.3e-194 681.8 538 63.9
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 7.4e-194 681.0 562 62.6
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 9.6e-194 680.6 501 66.7
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 2.8e-193 679.1 557 63.0
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 3.7e-193 678.7 502 67.3
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 4.0e-192 675.2 538 63.8
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 5.3e-192 674.9 502 66.7
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 2.6e-191 672.5 533 63.6
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.5e-191 671.8 504 66.5
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 7.6e-191 671.0 503 65.8
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 3.8e-190 668.7 511 64.4
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.5e-190 667.9 503 65.6
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-189 667.2 508 65.6
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.4e-189 666.8 502 65.7
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.4e-189 666.8 510 64.9
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.2e-189 665.6 504 66.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.5e-189 664.8 504 65.7
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.2e-188 663.7 510 64.9
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.2e-188 663.7 510 64.5
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 3.5e-188 662.1 551 64.8
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 3.5e-188 662.1 540 62.0
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.0e-188 661.4 539 61.2
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.3e-187 660.2 697 52.1
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 5.1e-187 658.3 508 64.2
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 5.1e-187 658.3 536 62.7
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 6.7e-187 657.9 541 61.2
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 8.7e-187 657.5 536 61.6
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 1.3e-185 653.7 555 62.2
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 2.1e-185 652.9 519 62.2
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 4.8e-185 651.7 561 61.5
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 8.2e-185 651.0 537 60.1
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.4e-184 649.4 555 61.8
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 9.0e-184 647.5 508 62.8
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.6e-183 646.0 544 59.6
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 4.5e-183 645.2 510 63.9
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 6.5e-182 641.3 492 65.2
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 1.4e-181 640.2 507 61.5
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 3.2e-181 639.0 555 58.6
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 3.2e-181 639.0 541 60.8
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 5.5e-181 638.3 551 59.5
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.1e-180 634.8 411 75.7
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.6e-177 626.7 582 55.7
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 4.8e-177 625.2 523 60.2
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 4.8e-177 625.2 447 69.1
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 5.3e-176 621.7 568 56.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.5e-175 620.2 545 58.2
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 3.4e-175 619.0 510 62.0
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 6.5e-174 614.8 549 57.4
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 2.5e-173 612.8 557 58.7
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 3.0e-171 605.9 546 58.4
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.1e-170 604.0 537 57.2
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 3.3e-170 602.4 537 57.5
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.2e-169 599.7 543 57.3
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 2.6e-167 592.8 550 55.6
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 5.9e-167 591.7 541 56.2
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 7.2e-165 584.7 546 55.3
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 3.0e-163 579.3 546 54.8
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 8.2e-161 571.2 567 53.3
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.0e-158 564.3 571 52.0
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.7e-158 563.5 552 54.5
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 3.8e-158 562.4 549 53.9
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 5.0e-158 562.0 550 54.0
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 6.5e-158 561.6 544 55.0
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.1e-157 560.8 548 54.4
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 6.1e-156 555.1 545 54.5
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.1e-156 555.1 705 46.4
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 1.0e-155 554.3 548 54.0
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.5e-154 550.4 548 53.8
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.3e-153 547.4 548 53.3
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 3.7e-153 545.8 543 54.0
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 8.2e-153 544.7 543 54.5
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 7.0e-152 541.6 557 52.4
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 1.2e-151 540.8 589 50.9
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.5e-146 523.9 519 54.9
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 2.6e-146 523.1 547 51.9
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 5.7e-138 495.4 563 50.6
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.5e-135 485.7 322 73.9
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.0e-134 484.6 499 51.9
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 4.7e-132 475.7 311 75.2
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 9.8e-130 468.0 361 64.5
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 1.4e-128 464.2 337 68.5
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 1.7e-126 457.2 340 67.9
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 2.0e-106 390.6 385 55.1
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.6e-100 370.9 374 51.6
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 3.6e-100 369.8 355 54.6
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 5.8e-98 362.5 330 60.3
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.6e-95 354.4 530 37.0
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 3.6e-92 343.2 520 37.7
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.1e-91 341.7 518 38.2
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 4.5e-90 336.3 524 39.1
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 3.9e-86 323.2 528 36.0
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 6.7e-86 322.4 337 53.1
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 3.7e-84 316.6 403 44.4
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.2e-82 311.6 335 49.0
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.4e-75 287.3 231 66.2
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.1e-67 261.9 214 65.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.5e-61 240.7 147 78.9
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.7e-60 238.0 220 59.1
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 2.2e-60 237.7 151 75.5
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.2e-55 221.9 167 67.7
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.6e-55 221.5 132 78.0
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 3.9e-54 216.9 140 70.0
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 5.7e-53 213.0 134 74.6
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.3e-44 185.3 104 79.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 3.5e-42 177.2 583 27.6
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.0e-38 164.1 157 56.1
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 5.7e-29 133.3 162 46.3
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 8.3e-28 129.4 99 64.6
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.1e-23 114.8 83 65.1
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.4e-22 112.1 128 50.0
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 2.8e-20 104.4 119 48.7
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 7.0e-19 99.8 108 50.0
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 7.0e-19 99.8 53 83.0
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.6e-15 88.6 72 58.3
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 3.6e-15 87.4 108 42.6
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 5.2e-14 83.6 156 39.1
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.5e-13 82.0 101 43.6
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 2.9e-12 77.8 62 58.1
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-11 75.9 92 44.6
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 7.0e-11 73.2 80 46.2
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.0e-09 69.3 62 46.8
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.3e-08 64.3 91 35.2
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 4.0e-06 57.4 99 42.4
Rhsim01G0150500 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.2e-06 57.0 60 50.0


User provided reference genes

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