Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.0e-87 326.6 161 100.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 4.5e-54 214.9 109 96.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.8e-45 185.3 117 74.4
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 8.4e-45 184.1 117 73.5
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-44 183.7 117 73.5
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.4e-44 183.3 117 73.5
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 3.5e-43 178.7 117 70.9
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.6e-43 178.3 117 71.8
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 6.0e-43 177.9 117 71.8
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 7.9e-43 177.6 121 71.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.0e-42 177.2 117 71.8
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-42 176.4 117 71.8
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 3.9e-42 175.3 109 76.1
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 5.1e-42 174.9 116 70.7
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 8.7e-42 174.1 116 69.0
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 8.7e-42 174.1 118 72.0
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-41 173.3 117 69.2
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.9e-41 172.9 118 72.0
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.9e-41 172.9 118 71.2
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 7.4e-41 171.0 117 69.2
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 7.4e-41 171.0 121 66.9
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.3e-40 170.2 117 68.4
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.3e-40 170.2 121 67.8
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.6e-40 169.9 117 67.5
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.6e-40 169.9 117 65.8
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.1e-40 169.5 109 72.5
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.1e-40 169.5 109 72.5
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 2.1e-40 169.5 109 71.6
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.8e-40 169.1 109 73.4
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 2.8e-40 169.1 118 71.2
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.8e-40 169.1 117 67.5
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 3.7e-40 168.7 117 69.2
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 4.8e-40 168.3 117 66.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.8e-40 168.3 117 66.7
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 8.2e-40 167.5 117 65.8
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 8.2e-40 167.5 117 66.7
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.1e-39 167.2 116 65.5
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.1e-39 167.2 117 66.7
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.1e-39 167.2 109 70.6
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.4e-39 166.8 109 71.6
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.8e-39 166.4 117 66.7
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.8e-39 166.4 109 70.6
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.8e-39 166.4 109 70.6
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 2.4e-39 166.0 109 70.6
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.4e-39 166.0 117 66.7
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 2.4e-39 166.0 116 69.8
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.4e-39 166.0 109 72.5
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.1e-39 165.6 110 70.0
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.1e-39 165.6 117 67.5
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 4.0e-39 165.2 117 65.8
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.0e-39 165.2 117 68.4
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 4.0e-39 165.2 121 66.1
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 4.0e-39 165.2 109 71.6
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 5.3e-39 164.9 117 66.7
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 5.3e-39 164.9 116 69.0
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.9e-39 164.5 117 65.8
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 6.9e-39 164.5 108 70.4
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 6.9e-39 164.5 109 72.5
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 6.9e-39 164.5 117 67.5
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 6.9e-39 164.5 117 65.8
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 9.0e-39 164.1 117 65.0
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 9.0e-39 164.1 117 65.8
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.2e-38 163.7 117 65.0
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.5e-38 163.3 117 65.8
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.5e-38 163.3 117 65.0
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.5e-38 163.3 106 73.6
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.5e-38 163.3 119 66.4
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 2.0e-38 162.9 117 65.0
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 2.0e-38 162.9 117 63.2
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 3.4e-38 162.2 117 65.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 3.4e-38 162.2 117 65.8
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 5.8e-38 161.4 117 64.1
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 5.8e-38 161.4 109 72.5
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 7.6e-38 161.0 106 72.6
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 3.8e-37 158.7 117 63.2
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 3.8e-37 158.7 109 67.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 4.9e-37 158.3 119 65.5
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 4.9e-37 158.3 117 63.2
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 4.9e-37 158.3 109 68.8
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 4.9e-37 158.3 109 67.0
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 6.5e-37 157.9 109 68.8
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 8.4e-37 157.5 109 68.8
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 1.1e-36 157.1 109 62.4
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.4e-36 156.8 114 64.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.4e-36 156.8 117 64.1
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.5e-36 156.0 117 63.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 4.2e-36 155.2 121 60.3
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 4.2e-36 155.2 114 64.0
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 5.5e-36 154.8 117 65.0
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 9.3e-36 154.1 117 63.2
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.1e-35 152.9 117 64.1
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 6.0e-35 151.4 106 62.3
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 7.9e-35 151.0 108 64.8
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.3e-34 150.2 121 57.0
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-34 150.2 99 71.7
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.3e-34 149.4 117 59.0
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.0e-34 149.1 109 64.2
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.0e-34 149.1 109 64.2
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 6.7e-34 147.9 117 59.0
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 6.7e-34 147.9 117 58.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.9e-33 146.4 102 67.6
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.9e-33 146.4 103 68.9
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.9e-33 146.4 121 57.0
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.5e-33 146.0 105 69.5
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-33 145.6 91 75.8
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 3.3e-33 145.6 109 60.6
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 9.7e-33 144.1 109 59.6
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 9.7e-33 144.1 109 60.6
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 2.2e-32 142.9 110 60.0
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.2e-32 142.9 117 57.3
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 3.7e-32 142.1 110 60.9
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 4.8e-32 141.7 117 51.3
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 8.2e-32 141.0 110 59.1
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 8.2e-32 141.0 110 60.0
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 8.2e-32 141.0 110 59.1
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.1e-31 140.6 110 59.1
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 2.4e-31 139.4 110 60.0
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 9.0e-31 137.5 109 57.8
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 7.6e-30 134.4 78 79.5
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 5.0e-29 131.7 115 59.1
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 3.6e-27 125.6 110 54.5
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 3.0e-26 122.5 122 46.7
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.1e-19 99.8 71 67.6
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 6.1e-19 98.2 103 50.5
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 7.9e-19 97.8 86 60.5
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.1e-17 94.0 124 41.1
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 7.7e-14 81.3 109 45.0
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 7.2e-12 74.7 74 44.6
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.1e-09 67.4 116 37.9


User provided reference genes

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