Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 5.4e-220 767.7 485 100.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 3.9e-93 346.3 414 52.4
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 7.5e-89 332.0 412 51.2
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.5e-84 317.8 420 47.9
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 9.5e-84 315.1 418 49.3
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.8e-83 313.5 422 48.8
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 5.2e-82 309.3 420 47.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.1e-79 301.6 424 47.9
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 3.2e-79 300.1 425 47.5
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 3.2e-79 300.1 412 46.6
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 4.1e-79 299.7 415 47.5
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 2.7e-78 297.0 417 47.0
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 3.9e-77 293.1 411 46.2
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.6e-75 286.6 433 45.7
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.7e-75 286.2 421 46.6
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 4.7e-75 286.2 471 42.0
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 8.1e-75 285.4 445 44.7
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.6e-73 280.4 422 45.3
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 9.9e-73 278.5 432 45.6
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.2e-72 277.3 417 45.6
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 3.2e-71 273.5 425 44.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.2e-71 273.5 424 43.6
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 9.2e-71 271.9 425 46.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 3.5e-70 270.0 429 43.1
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 3.5e-70 270.0 416 44.0
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.5e-70 270.0 445 43.8
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 6.0e-70 269.2 442 43.9
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 2.3e-69 267.3 430 45.3
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.0e-69 266.9 415 44.1
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 6.6e-69 265.8 422 45.0
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 8.7e-69 265.4 429 42.0
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 8.7e-69 265.4 421 45.8
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-68 264.6 419 44.4
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 3.3e-68 263.5 439 44.0
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 4.3e-68 263.1 421 43.7
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 4.3e-68 263.1 441 41.5
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 4.3e-68 263.1 477 45.1
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.6e-68 262.7 429 42.2
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 9.6e-68 261.9 413 42.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 2.8e-67 260.4 521 39.0
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.6e-67 260.0 351 50.7
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 6.2e-67 259.2 471 41.6
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.1e-67 258.8 431 43.4
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.1e-66 258.5 412 44.2
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.8e-66 257.7 441 43.3
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 2.4e-66 257.3 421 43.2
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.4e-66 257.3 430 41.6
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.9e-66 255.8 432 44.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 9.0e-66 255.4 390 44.1
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.2e-65 255.0 428 41.4
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 9.9e-65 251.9 412 41.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.7e-64 251.1 440 40.5
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.9e-64 250.4 422 43.8
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 3.8e-64 250.0 404 44.6
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 4.9e-64 249.6 423 41.8
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 6.4e-64 249.2 425 42.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.1e-63 248.4 436 41.7
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.4e-63 248.1 387 45.5
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.4e-63 248.1 408 42.9
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 4.2e-63 246.5 420 40.5
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.2e-63 246.5 420 42.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.2e-63 246.5 433 41.6
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.6e-62 244.6 423 41.8
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.5e-62 243.4 428 40.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-61 241.5 420 41.9
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.7e-61 241.1 407 40.8
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 3.0e-61 240.4 429 40.8
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 3.0e-61 240.4 418 40.0
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.9e-61 240.0 506 38.1
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 4.3e-60 236.5 424 40.3
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 2.1e-59 234.2 396 41.7
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 8.1e-59 232.3 404 40.6
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.1e-58 231.9 409 42.1
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.4e-58 230.7 401 41.9
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 5.3e-58 229.6 447 38.5
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 6.9e-58 229.2 415 39.8
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.5e-57 228.0 248 56.5
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 5.8e-57 226.1 417 39.6
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.3e-56 224.9 381 43.3
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.7e-56 224.6 421 40.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.7e-56 224.6 420 40.5
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 3.8e-56 223.4 422 39.3
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 6.4e-56 222.6 435 38.2
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 8.4e-56 222.2 416 40.9
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.1e-55 221.9 412 41.0
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.4e-55 221.5 413 39.7
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 1.9e-55 221.1 424 38.9
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 4.2e-55 219.9 412 40.8
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 7.1e-55 219.2 409 39.9
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 7.1e-55 219.2 344 44.8
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.2e-54 218.4 419 38.9
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 2.7e-54 217.2 412 39.3
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.3e-53 214.9 407 39.3
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-53 214.9 441 38.5
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.3e-53 214.9 422 37.7
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 3.0e-53 213.8 552 34.8
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.9e-53 213.4 417 39.6
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.1e-52 211.8 415 38.3
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.9e-52 211.1 430 38.8
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 3.3e-52 210.3 302 49.3
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 7.4e-52 209.1 418 37.3
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.3e-51 208.4 413 37.5
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 2.1e-51 207.6 419 38.4
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.0e-50 203.4 389 38.6
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 5.3e-50 203.0 392 39.5
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 7.9e-46 189.1 399 35.1
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 3.9e-45 186.8 388 37.1
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.1e-44 185.3 307 43.0
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.0e-41 174.5 418 35.4
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.3e-37 161.0 390 33.8
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 4.2e-31 140.2 253 42.7
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.6e-30 136.7 359 33.4
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.9e-29 133.7 430 27.2
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.3e-28 130.2 101 66.3
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.8e-27 127.5 122 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.1e-26 125.6 470 28.9
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 4.5e-25 120.2 445 28.5
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 4.5e-25 120.2 420 27.4
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.0e-21 107.5 325 32.0
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.5e-20 105.1 433 27.9
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 7.4e-20 102.8 301 30.6
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 8.2e-19 99.4 107 52.3
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.4e-18 98.6 181 38.1
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.5e-17 95.1 258 31.8
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.3e-16 92.0 106 50.0
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 2.2e-16 91.3 172 39.0
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 2.7e-14 84.3 257 34.2
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 3.6e-14 84.0 167 35.3
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.7e-13 79.7 69 56.5
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 6.7e-13 79.7 146 39.7
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.5e-12 78.6 69 58.0
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.8e-11 74.3 68 51.5
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 7.0e-10 69.7 285 28.4
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 3.5e-09 67.4 58 51.7
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 6.5e-08 63.2 67 53.7
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 3.6e-06 57.4 80 42.5
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.0e-06 56.2 62 43.5


User provided reference genes

Program Settings