Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 0.0e+00 2533.4 1356 100.0
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.3e-260 904.0 1384 43.0
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 1.3e-255 887.5 1129 46.7
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 2.0e-248 863.6 1272 43.3
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 7.6e-248 861.7 1384 42.1
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 1.6e-245 854.0 1279 43.2
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 3.7e-242 842.8 1356 41.5
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 1.4e-241 840.9 1354 41.4
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 2.5e-235 820.1 1257 40.9
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 2.5e-235 820.1 1379 39.9
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 1.3e-234 817.8 1320 41.2
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 1.5e-232 810.8 1345 39.6
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 2.0e-232 810.4 1179 41.7
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 2.3e-228 797.0 1449 38.3
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 2.0e-224 783.9 1335 39.3
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 4.7e-221 772.7 1305 39.6
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.9e-214 750.7 1155 40.3
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 2.3e-212 743.8 1425 38.2
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 2.3e-212 743.8 1170 40.4
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 6.8e-212 742.3 1328 38.0
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 6.8e-212 742.3 1264 39.0
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 4.1e-209 733.0 1288 38.0
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 2.5e-206 723.8 1135 40.0
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 3.6e-205 719.9 1281 37.5
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 1.5e-203 714.5 1188 39.6
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 2.6e-203 713.8 1167 38.6
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 3.4e-203 713.4 1154 39.1
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 1.8e-201 707.6 1162 39.7
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 1.6e-200 704.5 1290 37.0
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 5.9e-200 702.6 925 43.8
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 1.3e-199 701.4 1156 40.1
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 8.6e-199 698.7 1048 41.1
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 9.5e-198 695.3 1239 37.7
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 5.7e-195 686.0 1156 39.4
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 3.2e-193 680.2 1184 39.0
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 3.5e-192 676.8 1140 38.1
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 2.8e-189 667.2 1157 37.8
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.0e-187 661.0 1170 37.1
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 5.0e-183 646.4 1209 36.6
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 4.3e-182 643.3 1148 37.0
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 9.5e-182 642.1 1128 37.3
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 1.2e-181 641.7 1135 37.2
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.6e-181 641.3 1141 37.2
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 2.3e-180 637.5 1117 37.3
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 7.1e-177 625.9 1170 37.5
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.6e-176 624.8 1164 37.5
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.0e-175 622.1 1132 36.7
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.7e-175 621.3 1166 37.4
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.1e-173 614.4 1164 37.1
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 4.7e-173 613.2 1159 36.3
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 4.7e-173 613.2 1504 34.0
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 1.4e-172 611.7 1134 38.0
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 2.6e-171 607.4 1175 35.4
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 1.7e-170 604.7 1166 36.8
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 3.2e-169 600.5 1142 36.5
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 3.2e-169 600.5 1136 36.0
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 1.3e-167 595.1 1147 36.2
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.7e-167 594.7 1151 35.5
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.7e-167 594.7 1166 36.0
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 3.0e-167 594.0 976 39.2
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 8.6e-167 592.4 1148 35.7
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 3.3e-166 590.5 1147 36.1
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 5.2e-164 583.2 1332 34.2
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 7.6e-163 579.3 1331 36.1
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 2.2e-162 577.8 1146 36.0
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 1.1e-161 575.5 1166 35.8
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 1.2e-160 572.0 1166 35.2
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 4.6e-160 570.1 1183 34.9
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 4.6e-160 570.1 1573 30.9
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 7.8e-160 569.3 1151 35.7
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 3.9e-159 567.0 1133 35.0
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 4.3e-158 563.5 1145 34.3
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 7.3e-158 562.8 1164 34.3
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 7.3e-158 562.8 1121 35.4
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 6.9e-156 556.2 1161 34.7
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 4.4e-155 553.5 1207 34.3
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 5.4e-153 546.6 1136 34.6
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 1.2e-152 545.4 1505 31.6
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 3.0e-151 540.8 1134 34.7
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.0e-151 540.8 1537 30.8
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 1.1e-150 538.9 1144 34.6
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 4.3e-150 537.0 1146 35.3
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 3.6e-149 533.9 1184 34.0
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 4.8e-149 533.5 1130 33.5
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 2.4e-148 531.2 1197 33.8
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 5.3e-148 530.0 1533 29.4
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 9.9e-147 525.8 1153 33.9
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 4.9e-146 523.5 1128 34.5
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 2.7e-144 517.7 1145 33.9
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 5.6e-142 510.0 1165 33.2
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 2.8e-141 507.7 1139 32.7
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 4.5e-139 500.4 1129 34.7
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 4.5e-139 500.4 1154 33.8
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 1.8e-135 488.4 1140 32.9
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 2.3e-135 488.0 1145 32.7
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 5.1e-135 486.9 1215 31.8
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 1.5e-134 485.3 1152 32.1
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 9.0e-132 476.1 1110 32.3
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 2.0e-131 474.9 1118 33.2
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 7.6e-131 473.0 1118 33.2
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 3.8e-130 470.7 682 40.9
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 5.0e-130 470.3 1195 32.0
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 1.1e-129 469.2 1110 31.7
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 2.8e-125 454.5 390 61.8
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.6e-123 448.0 957 34.3
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.6e-123 448.0 770 39.0
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 9.7e-118 429.5 969 33.4
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 2.5e-113 414.8 1171 30.7
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 3.3e-110 404.4 1163 30.4
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 4.8e-109 400.6 961 32.4
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 3.1e-108 397.9 930 33.4
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 2.7e-99 368.2 477 43.6
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 1.6e-75 289.3 336 48.2
Eucgr.F03782 Eucalyptus grandis HOM05D004094 ORTHO05D004601 1.9e-68 265.8 577 34.8
PGSC0003DMG400017557 Solanum tuberosum HOM05D004094 ORTHO05D004601 4.0e-63 248.1 287 48.4
FAN27G0677 Fragaria x ananassa HOM05D004094 ORTHO05D004601 6.8e-63 247.3 580 32.9
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 6.8e-63 247.3 532 33.1
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 2.0e-62 245.7 566 37.5
Lj7A339G40 Lonicera japonica HOM05D004094 ORTHO05D004601 2.5e-57 228.8 410 37.3
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 4.1e-52 211.5 895 25.1
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 6.0e-51 207.6 410 35.4
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 7.8e-51 207.2 593 29.8
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 5.1e-50 204.5 471 32.1
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 1.1e-49 203.4 257 44.4
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 1.5e-49 203.0 607 29.7
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 3.3e-49 201.8 615 28.6
Dinv27324 Davidia involucrata HOM05D004094 ORTHO05D004601 2.6e-46 192.2 218 48.6
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 9.9e-46 190.3 442 33.7
COL.COLO4_35940 Corchorus olitorius HOM05D004094 ORTHO05D004601 6.4e-45 187.6 417 35.3
TWI36G0382 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 7.1e-44 184.1 399 34.3
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 8.7e-42 177.2 274 41.6
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 1.3e-40 173.3 560 28.4
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 2.4e-39 169.1 435 31.3
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 2.9e-37 162.2 128 62.5
Actinidia02614 Actinidia chinensis HOM05D004094 ORTHO05D004601 8.4e-37 160.6 254 40.2
TWI36G0013 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 2.8e-32 145.6 285 33.0
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 1.1e-28 133.7 161 44.1
Duzib093G1173 Durio zibethinus HOM05D004094 ORTHO05D004601 4.2e-28 131.7 173 46.8
VMungo1383G1238 Vigna mungo HOM05D004094 ORTHO05D004601 2.1e-27 129.4 420 27.9
GSVIVG01008881001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.0e-26 127.1 173 40.5
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 1.3e-26 126.7 132 48.5
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 2.8e-24 119.0 417 28.1
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 4.8e-24 118.2 391 27.9
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 6.2e-24 117.9 313 29.1
Lj7A339G41 Lonicera japonica HOM05D004094 ORTHO05D004601 3.9e-18 98.6 81 60.5
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.9e-17 96.3 374 26.7
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 2.8e-16 92.4 354 27.1
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 4.1e-15 88.6 105 41.9
BolC2t09506H Brassica oleracea HOM05D004094 ORTHO05D004601 6.9e-15 87.8 390 26.2
TWI77G0135 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 3.4e-14 85.5 84 50.0
MBI03_g47842_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 7.2e-12 77.8 92 46.7
SHI23040 Sapria himalayana HOM05D004094 ORTHO05D004601 7.2e-12 77.8 84 50.0
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 1.2e-11 77.0 310 23.5
Actinidia02612 Actinidia chinensis HOM05D004967 ORTHO05D004601 1.8e-10 73.2 95 42.1
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 1.8e-10 73.2 318 22.0
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 1.5e-09 70.1 76 44.7
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 1.9e-09 69.7 308 23.1
Lj3g0003647 Lotus japonicus HOM05D004977 ORTHO05D006454 1.9e-09 69.7 321 22.7
VMungo1127G1403 Vigna mungo HOM05D004977 ORTHO05D006454 1.9e-09 69.7 321 21.2
AagrBONN_evm.TU.Sc2ySwM_228.1947 Anthoceros agrestis HOM05D004977 ORTHO05D006454 3.3e-09 68.9 324 24.4
Medtr4g050180 Medicago truncatula HOM05D004977 ORTHO05D006454 4.3e-09 68.6 318 21.4
CANSAT25G3123 Cannabis sativa HOM05D004977 ORTHO05D006454 5.7e-09 68.2 318 21.4
Lj7A339G38 Lonicera japonica HOM05D004094 ORTHO05D004601 5.7e-09 68.2 257 26.8
Phvul.011G100500 Phaseolus vulgaris HOM05D004977 ORTHO05D006454 7.4e-09 67.8 321 21.8
Glyma.06G308700 Glycine max HOM05D004977 ORTHO05D006454 9.7e-09 67.4 321 20.9
Cfa008660 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.6e-08 66.6 54 53.7
Ca_19486_v3 Cicer arietinum L. HOM05D004977 ORTHO05D006454 1.6e-08 66.6 309 22.3
Aqoxy1G00589 Aquilegia oxysepala HOM05D004977 ORTHO05D006454 2.8e-08 65.9 318 22.3
Glyma.12G096100 Glycine max HOM05D004977 ORTHO05D006454 2.8e-08 65.9 318 21.4
Cfa003011 Carpinus fangiana HOM05D004094 ORTHO05D004601 4.8e-08 65.1 51 54.9
Lalb_Chr01g0005801 Lupinus albus HOM05D004977 ORTHO05D006454 4.8e-08 65.1 318 23.0
arahy.Tifrunner.gnm1.ann1.7R5ZBL Arachis hypogaea HOM05D004977 ORTHO05D006454 1.8e-07 63.2 325 20.6
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 1.8e-07 63.2 58 46.6
QL01p019105 Quercus lobata HOM05D004977 ORTHO05D006454 1.2e-06 60.5 306 21.6
Cfa027206 Carpinus fangiana HOM05D004618 ORTHO05D005318 2.0e-06 59.7 142 26.8
TPR.G4657 Trifolium pratense HOM05D004977 ORTHO05D006454 2.0e-06 59.7 213 25.8
Eucgr.J00591 Eucalyptus grandis HOM05D004977 ORTHO05D006454 4.5e-06 58.5 128 29.7


User provided reference genes

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