Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 3.0e-246 855.1 571 100.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 6.7e-137 491.9 525 70.1
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.3e-91 340.1 444 68.5
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.0e-88 330.9 490 56.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.6e-88 330.5 419 67.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 7.5e-88 328.9 549 52.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 9.8e-88 328.6 472 62.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.9e-87 327.0 462 63.9
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.9e-87 327.0 493 65.1
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 2.9e-87 327.0 486 55.1
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.7e-87 326.6 483 64.6
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 6.4e-87 325.9 470 60.9
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.8e-86 324.3 437 59.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.1e-86 323.2 472 62.7
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.4e-86 322.8 441 69.6
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.2e-85 321.6 476 65.1
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.7e-85 320.5 472 66.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 4.6e-85 319.7 389 72.5
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 5.9e-85 319.3 471 62.0
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 3.9e-84 316.6 471 59.2
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 3.9e-84 316.6 471 63.7
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.8e-82 310.5 452 62.4
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.7e-82 309.7 463 66.1
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 4.7e-82 309.7 463 68.0
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 6.8e-81 305.8 470 61.7
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 8.9e-81 305.4 449 65.9
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.2e-80 305.1 474 66.9
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.6e-80 303.9 501 53.1
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 3.4e-80 303.5 466 63.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 4.4e-80 303.1 477 63.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.3e-79 301.6 499 62.3
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.2e-79 300.8 451 67.4
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.2e-79 300.8 468 62.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 4.9e-79 299.7 464 63.1
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.1e-78 298.5 506 58.5
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.1e-78 298.5 490 60.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.4e-78 297.4 501 58.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 7.0e-78 295.8 476 61.3
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 7.0e-78 295.8 495 59.4
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.2e-77 295.0 474 61.6
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.6e-77 294.7 484 62.6
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.0e-77 294.3 481 62.8
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 2.7e-77 293.9 464 63.8
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 3.5e-77 293.5 392 53.1
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.0e-76 292.0 478 63.8
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.0e-76 292.0 499 52.9
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.3e-76 290.8 448 64.7
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.0e-76 290.4 518 59.3
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 3.9e-76 290.0 458 60.3
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 5.0e-76 289.7 505 57.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 5.0e-76 289.7 447 61.3
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.1e-75 288.5 460 59.3
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.1e-75 288.5 498 59.4
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.5e-75 287.3 433 66.3
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.5e-75 287.3 401 69.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.5e-75 287.3 423 66.7
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.3e-75 286.6 445 61.3
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 5.6e-75 286.2 448 64.3
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 5.6e-75 286.2 434 58.3
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 2.8e-74 283.9 540 55.9
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.6e-74 283.5 175 84.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.7e-74 283.1 463 57.5
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 8.1e-74 282.3 423 62.4
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.1e-74 282.3 513 55.2
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.4e-73 281.6 186 79.6
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.8e-73 281.2 475 52.6
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.3e-73 280.8 430 63.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.0e-73 280.0 385 70.1
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 4.0e-73 280.0 442 63.3
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 6.8e-73 279.3 445 64.3
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 8.9e-73 278.9 190 77.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 8.9e-73 278.9 453 63.1
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 8.9e-73 278.9 176 80.1
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.5e-72 278.1 182 79.1
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 5.8e-72 276.2 426 64.3
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 9.8e-72 275.4 464 62.7
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.7e-71 274.6 188 76.1
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.9e-71 273.9 489 57.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 4.9e-71 273.1 184 77.7
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.4e-71 272.7 459 64.1
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 6.4e-71 272.7 188 76.1
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 1.4e-70 271.6 450 62.9
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.9e-70 271.2 415 68.4
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.6e-69 268.1 428 64.0
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.5e-69 266.9 457 61.5
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 6.0e-69 266.2 165 81.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.0e-68 265.4 511 56.9
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 2.3e-68 264.2 165 80.6
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.0e-68 263.8 177 76.8
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 5.1e-68 263.1 499 55.9
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.6e-68 262.7 177 76.3
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 8.6e-68 262.3 160 81.9
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.1e-67 261.9 413 65.4
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.5e-67 261.5 498 57.4
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.9e-67 261.2 420 64.8
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.5e-67 260.8 404 66.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.3e-67 260.4 184 75.0
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 4.3e-67 260.0 495 60.4
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 7.3e-67 259.2 411 66.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 9.5e-67 258.8 400 70.0
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-66 258.1 386 62.7
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.6e-66 258.1 164 79.3
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.6e-66 258.1 187 74.9
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.6e-66 256.9 411 65.0
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.6e-66 256.9 533 50.1
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 8.1e-66 255.8 163 80.4
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 8.1e-66 255.8 490 50.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 8.1e-66 255.8 189 73.5
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.4e-65 255.0 485 62.3
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 5.2e-65 253.1 383 65.5
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 6.8e-65 252.7 531 56.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 8.9e-65 252.3 383 65.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 8.9e-65 252.3 383 65.3
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-64 251.9 173 74.0
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-64 250.0 174 74.1
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 7.6e-64 249.2 174 77.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-63 248.4 383 64.5
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.2e-63 247.7 147 84.4
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-62 245.0 383 61.9
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 4.1e-62 243.4 173 74.0
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-62 243.0 155 79.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.7e-60 238.0 477 47.6
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-59 234.6 133 85.7
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-59 233.8 383 64.5
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 9.6e-59 232.3 132 85.6
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-58 230.7 132 85.6
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 3.6e-58 230.3 416 50.5
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 4.7e-58 229.9 383 62.1
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-57 228.4 124 89.5
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-57 227.6 129 86.0
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-56 224.9 164 72.6
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.5e-56 224.9 342 65.8
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-56 224.6 191 66.5
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 5.8e-56 223.0 383 38.9
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 7.6e-56 222.6 132 82.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-54 218.8 383 58.2
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-54 216.9 181 65.7
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 5.4e-54 216.5 179 67.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 9.3e-54 215.7 135 83.0
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-52 212.2 175 68.6
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-52 212.2 175 68.6
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 4.3e-51 206.8 183 61.7
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 5.6e-51 206.5 187 63.1
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.4e-46 191.0 387 53.2
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 5.4e-46 189.9 154 66.2
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.9e-43 181.4 133 70.7
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 5.6e-43 179.9 100 89.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 9.6e-43 179.1 140 71.4
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-42 178.3 125 76.0
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-41 174.5 132 70.5
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.2e-39 167.9 106 80.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 4.9e-39 166.8 103 78.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.0e-36 159.1 164 56.7
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.7e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 3.1e-33 147.5 143 57.3
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 7.6e-32 142.9 84 82.1
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.2e-31 141.4 179 52.5
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.9e-30 138.3 84 79.8
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 4.6e-29 133.7 147 47.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.6e-29 133.7 386 57.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 5.1e-28 130.2 70 92.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-27 127.9 85 72.9
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.3e-27 127.5 447 48.5
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 7.4e-27 126.3 85 71.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.2e-24 119.0 65 90.8
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 6.5e-23 113.2 122 57.4
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-22 110.9 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 5.5e-22 110.2 67 80.6
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-19 101.3 68 75.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.4e-17 95.5 56 87.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.9e-16 90.1 54 83.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.4e-14 85.5 56 78.6
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-11 75.9 51 68.6
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 5.7e-11 73.6 163 36.8
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 5.3e-09 67.0 54 59.3
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-08 63.9 46 63.0
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 8.5e-07 59.7 54 59.3


User provided reference genes

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