Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.1e-96 355.9 205 100.0
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.3e-63 246.9 173 69.9
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.0e-55 220.7 175 64.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.1e-54 217.2 175 62.9
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-54 217.2 196 59.2
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.9e-54 216.5 175 62.9
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.9e-54 216.5 185 61.6
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 9.7e-54 214.2 173 64.7
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.3e-53 213.8 172 65.1
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.2e-48 197.2 173 63.0
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 2.7e-48 196.1 174 60.3
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 6.3e-45 184.9 173 63.0
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 2.0e-43 179.9 173 56.6
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 3.4e-43 179.1 162 56.2
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.4e-43 179.1 173 57.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.3e-42 177.2 176 59.1
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 3.8e-42 175.6 173 55.5
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 8.5e-42 174.5 173 56.6
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-41 173.7 173 54.9
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.9e-41 173.3 175 56.6
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.9e-41 173.3 176 55.1
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 3.2e-41 172.6 173 56.1
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 3.2e-41 172.6 173 57.2
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 5.5e-41 171.8 130 66.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 5.5e-41 171.8 173 56.6
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 7.2e-41 171.4 173 55.5
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.2e-40 170.6 175 54.9
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.1e-40 169.9 173 56.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.6e-40 169.1 246 44.7
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 7.9e-40 167.9 173 56.1
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.0e-39 167.5 173 52.6
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.0e-39 167.5 173 52.6
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 2.3e-39 166.4 173 53.8
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 3.0e-39 166.0 173 52.6
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 3.0e-39 166.0 173 53.2
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 5.2e-39 165.2 105 74.3
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 5.2e-39 165.2 173 53.8
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 6.7e-39 164.9 173 53.2
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 8.8e-39 164.5 173 54.9
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 8.8e-39 164.5 173 54.3
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.8e-39 164.5 173 54.9
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.1e-38 164.1 173 54.9
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.5e-38 163.7 164 51.8
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 2.6e-38 162.9 173 53.2
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 2.6e-38 162.9 173 53.8
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.3e-38 162.5 173 52.0
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.3e-38 162.5 173 53.8
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.3e-38 162.5 173 54.3
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 3.3e-38 162.5 173 49.7
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 5.7e-38 161.8 173 53.2
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.7e-37 160.2 173 52.6
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 2.2e-37 159.8 173 53.8
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 2.8e-37 159.5 173 50.9
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 3.7e-37 159.1 173 52.6
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 3.7e-37 159.1 174 53.4
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.7e-37 159.1 173 52.6
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.7e-37 159.1 173 52.6
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 4.8e-37 158.7 173 53.2
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.8e-37 158.7 106 70.8
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 6.3e-37 158.3 173 50.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 8.2e-37 157.9 175 52.6
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 8.2e-37 157.9 173 51.4
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.1e-36 157.5 175 52.6
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.1e-36 157.5 173 50.9
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.4e-36 157.1 173 51.4
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.4e-36 157.1 173 51.4
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.4e-36 156.4 173 52.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.1e-36 156.0 173 50.9
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.1e-36 156.0 173 51.4
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 4.1e-36 155.6 173 52.0
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 4.1e-36 155.6 173 51.4
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 7.0e-36 154.8 173 52.6
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 9.1e-36 154.5 173 51.4
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.2e-35 154.1 175 52.0
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.5e-35 152.5 173 50.9
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 4.5e-35 152.1 175 51.4
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 5.9e-35 151.8 162 53.7
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 7.7e-35 151.4 175 51.4
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.7e-34 150.2 173 52.0
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 3.8e-34 149.1 173 50.9
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 5.0e-34 148.7 175 51.4
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 8.5e-34 147.9 173 51.4
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 8.5e-34 147.9 175 49.7
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.1e-33 147.5 205 44.9
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.9e-33 146.7 173 49.1
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 5.5e-33 145.2 175 49.1
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 5.5e-33 145.2 109 67.0
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 5.5e-33 145.2 173 49.7
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 7.2e-33 144.8 173 50.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 9.4e-33 144.4 131 57.3
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.2e-32 144.1 173 49.1
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.6e-32 143.7 173 49.7
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 3.6e-32 142.5 173 48.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 8.0e-32 141.4 173 48.6
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.0e-31 141.0 173 48.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.4e-31 140.6 173 48.0
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.8e-31 140.2 116 62.1
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 4.0e-31 139.0 190 44.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 5.2e-31 138.7 173 47.4
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.2e-30 137.5 131 55.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 7.5e-30 134.8 175 46.9
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.1e-28 131.0 145 51.7
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.1e-28 131.0 173 46.8
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-28 131.0 173 45.7
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 5.3e-28 128.6 131 55.7
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 4.5e-27 125.6 173 44.5
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.9e-27 125.2 105 60.0
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.9e-27 125.2 133 53.4
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.7e-26 123.6 185 43.8
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.0e-26 122.1 172 44.2
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.5e-26 121.7 91 69.2
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 5.5e-25 118.6 100 66.0
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.2e-24 117.5 165 45.5
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 2.1e-24 116.7 90 64.4
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 3.0e-23 112.8 106 50.0
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 4.0e-23 112.5 96 61.5
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.5e-22 110.5 96 60.4
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.7e-22 108.6 95 60.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 9.8e-22 107.8 96 59.4
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.8e-21 106.3 173 40.5
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 3.2e-17 92.8 80 58.8
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 4.5e-11 72.4 54 61.1


User provided reference genes

Program Settings