Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03880 Coffea canephora HOM05D007154 ORTHO05D008945 5.8e-86 320.9 161 100.0
Oeu019256.1 Olea europaea HOM05D007154 ORTHO05D008945 3.9e-50 201.8 154 67.5
PGSC0003DMG400025308 Solanum tuberosum HOM05D007154 ORTHO05D008945 3.3e-49 198.7 157 65.6
Peaxi162Scf00329g00212 Petunia axillaris HOM05D007154 ORTHO05D008945 6.2e-48 194.5 161 63.4
CAN.G419.16 Capsicum annuum HOM05D007154 ORTHO05D008945 1.4e-47 193.4 161 62.7
SalBow4G2238 Salvia bowleyana HOM05D007154 ORTHO05D008945 5.3e-47 191.4 154 64.9
Solyc04g008770.3 Solanum lycopersicum HOM05D007154 ORTHO05D008945 1.2e-46 190.3 157 62.4
Sopen04g003950 Solanum pennellii HOM05D007154 ORTHO05D008945 1.2e-46 190.3 157 62.4
DCAR_030346 Daucus carota HOM05D007154 ORTHO05D008945 2.6e-46 189.1 159 64.8
Dinv01916 Davidia involucrata HOM05D007154 ORTHO05D008945 1.3e-45 186.8 164 64.0
Nitab4.5_0007445g0030 Nicotiana tabacum HOM05D007154 ORTHO05D008945 2.2e-45 186.0 124 71.8
Nitab4.5_0011708g0010 Nicotiana tabacum HOM05D007154 ORTHO05D008945 2.9e-45 185.7 124 71.8
Cfa018670 Carpinus fangiana HOM05D007154 ORTHO05D008945 8.4e-45 184.1 164 64.0
GSVIVG01034352001 Vitis vinifera HOM05D007154 ORTHO05D008945 1.4e-44 183.3 152 64.5
Actinidia04367 Actinidia chinensis HOM05D007154 ORTHO05D008945 1.9e-44 183.0 161 61.5
Nitab4.5_0002707g0010 Nicotiana tabacum HOM05D007154 ORTHO05D008945 1.9e-44 183.0 124 70.2
QL01p000323 Quercus lobata HOM05D007154 ORTHO05D008945 5.5e-44 181.4 159 64.2
Migut.B01210 Erythranthe guttata HOM05D007154 ORTHO05D008945 1.6e-43 179.9 159 61.0
Ciclev10016869m.g Citrus clementina HOM05D007154 ORTHO05D008945 6.0e-43 177.9 159 60.4
Atru.chr11.40 Acer truncatum HOM05D007154 ORTHO05D008945 2.3e-42 176.0 157 60.5
Sabra10G0198000 Salix brachista HOM05D007154 ORTHO05D008945 2.3e-42 176.0 159 61.0
Potri.010G254600 Populus trichocarpa HOM05D007154 ORTHO05D008945 3.0e-42 175.6 159 61.0
Lsat_1_v5_gn_9_117140 Lactuca sativa HOM05D007154 ORTHO05D008945 1.5e-41 173.3 127 66.9
Lj3C844G3 Lonicera japonica HOM05D007154 ORTHO05D008945 2.5e-41 172.6 159 61.0
THA.LOC104800635 Tarenaya hassleriana HOM05D007154 ORTHO05D008945 3.3e-41 172.2 160 58.8
TWI53G1167 Tripterygium wilfordii HOM05D007154 ORTHO05D008945 5.6e-41 171.4 160 58.1
Thecc.02G152200 Theobroma cacao HOM05D007154 ORTHO05D008945 7.4e-41 171.0 167 58.1
CANSAT78G1733 Cannabis sativa HOM05D007154 ORTHO05D008945 9.6e-41 170.6 167 56.3
CSS0036440 Camellia sinensis var. sinensis HOM05D007154 ORTHO05D008945 1.3e-40 170.2 162 58.0
Aa31LG11G2830 Aethionema arabicum HOM05D007154 ORTHO05D008945 3.7e-40 168.7 160 58.8
SGA_v2.0_scaffold166G38315 Striga asiatica HOM05D007154 ORTHO05D008945 4.8e-40 168.3 157 58.6
Manes.04G160900 Manihot esculenta HOM05D007154 ORTHO05D008945 8.2e-40 167.5 163 57.1
Ah.10g037940 Amaranthus hybridus HOM05D007154 ORTHO05D008945 1.4e-39 166.8 161 56.5
TAR371G0017 Trochodendron aralioides HOM05D007154 ORTHO05D008945 1.4e-39 166.8 154 58.4
Gorai.012G136600 Gossypium raimondii HOM05D007154 ORTHO05D008945 1.8e-39 166.4 159 56.0
COL.COLO4_33150 Corchorus olitorius HOM05D007154 ORTHO05D008945 3.1e-39 165.6 159 57.2
Lalb_Chr01g0013651 Lupinus albus HOM05D007154 ORTHO05D008945 3.1e-39 165.6 160 56.9
Prupe.1G351600 Prunus persica HOM05D007154 ORTHO05D008945 3.1e-39 165.6 160 58.1
arahy.Tifrunner.gnm1.ann1.408I3G Arachis hypogaea HOM05D007154 ORTHO05D008945 4.0e-39 165.2 128 66.4
MD13G1001100 Malus domestica HOM05D007154 ORTHO05D008945 5.3e-39 164.9 159 57.2
Thhalv10005037m.g Eutrema salsugineum HOM05D007154 ORTHO05D008945 6.9e-39 164.5 172 54.1
Gohir.D04G150000 Gossypium hirsutum HOM05D007154 ORTHO05D008945 1.5e-38 163.3 167 55.7
MELO3C005082.2 Cucumis melo HOM05D007154 ORTHO05D008945 2.0e-38 162.9 162 56.8
AL6G34660 Arabidopsis lyrata HOM05D007154 ORTHO05D008945 2.6e-38 162.5 141 61.0
arahy.Tifrunner.gnm1.ann1.JHQS48 Arachis hypogaea HOM05D007154 ORTHO05D008945 2.6e-38 162.5 128 65.6
Sed0008143 Sechium edule HOM05D007154 ORTHO05D008945 3.4e-38 162.2 159 56.0
Aqoxy3G04335 Aquilegia oxysepala HOM05D007154 ORTHO05D008945 4.5e-38 161.8 158 58.9
Ca_23384_v3 Cicer arietinum L. HOM05D007154 ORTHO05D008945 4.5e-38 161.8 128 66.4
HanXRQChr13g0420721 Helianthus annuus HOM05D007154 ORTHO05D008945 4.5e-38 161.8 126 62.7
Medtr8g020800 Medicago truncatula HOM05D007154 ORTHO05D008945 5.8e-38 161.4 129 65.1
Eucgr.G02613 Eucalyptus grandis HOM05D007154 ORTHO05D008945 7.6e-38 161.0 163 55.8
ECA240G2562 Erigeron canadensis HOM05D007154 ORTHO05D008945 1.3e-37 160.2 159 54.1
AUR62023198 Chenopodium quinoa HOM05D007154 ORTHO05D008945 2.2e-37 159.5 144 58.3
Lj3g0022846 Lotus japonicus HOM05D007154 ORTHO05D008945 2.2e-37 159.5 159 56.0
FAN07G0022 Fragaria x ananassa HOM05D007154 ORTHO05D008945 2.9e-37 159.1 157 56.7
FAN17G3039 Fragaria x ananassa HOM05D007154 ORTHO05D008945 2.9e-37 159.1 157 57.3
EL10Ac2g04490 Beta vulgaris HOM05D007154 ORTHO05D008945 6.5e-37 157.9 158 57.6
Nn3g18537 Nelumbo nucifera HOM05D007154 ORTHO05D008945 6.5e-37 157.9 154 57.8
Psat4g220160 Pisum sativum HOM05D007154 ORTHO05D008945 6.5e-37 157.9 126 66.7
RcHm_v2.0_Chr4g0447181 Rosa chinensis HOM05D007154 ORTHO05D008945 6.5e-37 157.9 160 56.2
AT5G23395 Arabidopsis thaliana HOM05D007154 ORTHO05D008945 1.4e-36 156.8 161 54.7
Gohir.A04G109800 Gossypium hirsutum HOM05D007154 ORTHO05D008945 1.4e-36 156.8 159 53.5
SGA_v2.0_scaffold249G44952 Striga asiatica HOM05D007154 ORTHO05D008945 1.4e-36 156.8 128 62.5
CiPaw.16G000700 Carya illinoinensis HOM05D007154 ORTHO05D008945 2.5e-36 156.0 158 58.2
CDE04G0025 Ceratophyllum demersum HOM05D007154 ORTHO05D008945 2.5e-36 156.0 152 59.2
vmacro16164 Vaccinium macrocarpon HOM05D007154 ORTHO05D008945 2.5e-36 156.0 141 58.2
Carub.0006s2118 Capsella rubella HOM05D007154 ORTHO05D008945 4.2e-36 155.2 142 59.9
Sp2g23770 Schrenkiella parvula HOM05D007154 ORTHO05D008945 7.1e-36 154.5 123 61.8
ClCG01G007940 Citrullus lanatus HOM05D007154 ORTHO05D008945 1.2e-35 153.7 160 55.0
PGR142G2984 Punica granatum HOM05D007154 ORTHO05D008945 1.2e-35 153.7 114 67.5
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 1.6e-35 153.3 183 50.8
ATR0124G040 Amborella trichopoda HOM05D007154 ORTHO05D008945 2.7e-35 152.5 157 56.1
AUR62023245 Chenopodium quinoa HOM05D007154 ORTHO05D008945 7.9e-35 151.0 141 57.4
PSO063G0981 Papaver somniferum HOM05D007154 ORTHO05D008945 7.9e-35 151.0 154 54.5
PSO782G0712 Papaver somniferum HOM05D007154 ORTHO05D008945 7.9e-35 151.0 154 54.5
CsaV3_5G021910 Cucumis sativus L. HOM05D007154 ORTHO05D008945 1.3e-34 150.2 164 54.3
Glyma.07G039300 Glycine max HOM05D007154 ORTHO05D008945 2.3e-34 149.4 139 60.4
Haze_17398 Corylus avellana HOM05D007154 ORTHO05D008945 6.7e-34 147.9 161 56.5
VMungo0331G0746 Vigna mungo HOM05D007154 ORTHO05D008945 6.7e-34 147.9 158 54.4
C07p44160 Brassica napus HOM05D007154 ORTHO05D008945 1.1e-33 147.1 131 56.5
BolC7t44940H Brassica oleracea HOM05D007154 ORTHO05D008945 1.1e-33 147.1 131 56.5
HPP92_003488 Vanilla planifolia HOM05D007154 ORTHO05D008945 7.4e-33 144.4 127 57.5
Phvul.010G129500 Phaseolus vulgaris HOM05D007154 ORTHO05D008945 1.6e-32 143.3 126 62.7
Zm00001eb427080 Zea mays HOM05D007154 ORTHO05D008945 2.2e-32 142.9 153 49.0
HPP92_026886 Vanilla planifolia HOM05D007154 ORTHO05D008945 3.7e-32 142.1 108 64.8
Sc10g0006590 Simmondsia chinensis HOM05D007154 ORTHO05D008945 4.8e-32 141.7 159 52.8
TPR.G36620 Trifolium pratense HOM05D007154 ORTHO05D008945 6.3e-32 141.4 159 52.2
FvH4_4g37330 Fragaria vesca HOM05D007154 ORTHO05D008945 8.2e-32 141.0 106 65.1
A06p34370 Brassica napus HOM05D007154 ORTHO05D008945 1.4e-31 140.2 168 48.8
BraA06t26367Z Brassica rapa HOM05D007154 ORTHO05D008945 1.4e-31 140.2 168 48.8
BcaNung03727 Brassica carinata HOM05D007154 ORTHO05D008945 3.1e-31 139.0 103 66.0
Os04g0527700 Oryza sativa ssp. japonica HOM05D007154 ORTHO05D008945 1.2e-30 137.1 157 49.7
Hund16199 Selenicereus undatus HOM05D007154 ORTHO05D008945 3.4e-30 135.6 159 49.1
unitig_61.g26453 Utricularia gibba HOM05D007154 ORTHO05D008945 3.4e-30 135.6 123 59.3
CARHR190110 Cardamine hirsuta HOM05D007154 ORTHO05D008945 1.1e-28 130.6 105 62.9
TAR371G0737 Trochodendron aralioides HOM05D007154 ORTHO05D008945 1.9e-28 129.8 131 53.4
Cpa.g.sc221.16 Carica papaya HOM05D007154 ORTHO05D008945 4.2e-28 128.6 106 59.4
Glyma.16G008100 Glycine max HOM05D007154 ORTHO05D008945 5.5e-28 128.3 93 68.8
Zm00001eb076710 Zea mays HOM05D007154 ORTHO05D008945 5.1e-26 121.7 112 51.8
Duzib248G1404 Durio zibethinus HOM05D007154 ORTHO05D008945 1.1e-25 120.6 78 71.8
SHI21164 Sapria himalayana HOM05D007154 ORTHO05D008945 1.5e-25 120.2 114 55.3
Oeu037446.1 Olea europaea HOM05D007154 ORTHO05D008945 5.7e-25 118.2 84 69.0
TAR627G0850 Trochodendron aralioides HOM05D007154 ORTHO05D008945 2.8e-24 115.9 106 55.7
TAR622G0969 Trochodendron aralioides HOM05D007154 ORTHO05D008945 1.7e-21 106.7 131 48.9
Pp3c11_17450 Physcomitrium patens HOM05D007154 ORTHO05D008945 3.2e-20 102.4 112 46.4
Duzib051G0001 Durio zibethinus HOM05D007154 ORTHO05D008945 3.8e-13 79.0 95 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2201 Anthoceros agrestis HOM05D007154 ORTHO05D008945 8.5e-13 77.8 71 52.1
Mapoly0093s0036 Marchantia polymorpha HOM05D007154 ORTHO05D008945 3.6e-11 72.4 90 42.2
SEGI_35140 Sequoiadendron giganteum HOM05D007154 ORTHO05D008945 4.7e-11 72.0 59 54.2
Cfa026739 Carpinus fangiana HOM05D007154 ORTHO05D008945 2.8e-08 62.8 132 31.8


User provided reference genes

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