Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03820 Coffea canephora HOM05D045766 ORTHO05D010605 2.6e-189 665.2 333 100.0
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 1.3e-31 141.4 208 44.2
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 1.2e-29 134.8 273 37.0
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.5e-21 106.7 199 39.2
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 4.6e-21 106.3 226 35.8
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 7.4e-19 99.0 264 31.4
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 4.8e-18 96.3 278 32.4
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 1.1e-17 95.1 240 30.0
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.0e-15 88.6 254 33.5
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 1.7e-15 87.8 203 35.0
Cc00_g03830 Coffea canephora HOM05D045766 ORTHO05D010605 2.9e-15 87.0 67 68.7
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 6.5e-15 85.9 215 34.0
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.4e-14 84.7 126 39.7
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 2.1e-13 80.9 185 36.2
TPR.G12267 Trifolium pratense HOM05D008195 ORTHO05D010605 4.6e-13 79.7 189 32.8
Lsat_1_v5_gn_1_13501 Lactuca sativa HOM05D001093 ORTHO05D010605 1.0e-12 78.6 151 34.4
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 5.1e-12 76.3 251 27.9
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 8.7e-12 75.5 185 31.4
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 8.7e-12 75.5 191 30.9
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 1.5e-11 74.7 250 30.0
Gohir.A12G182333 Gossypium hirsutum HOM05D008195 ORTHO05D000743 2.5e-11 73.9 194 32.0
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 2.5e-11 73.9 195 33.3
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 3.3e-11 73.6 155 35.5
MSTRG.4449 Avicennia marina HOM05D001093 ORTHO05D010605 5.7e-11 72.8 128 32.8
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 9.6e-11 72.0 164 34.8
Aqoxy3G03627 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 6.2e-10 69.3 217 30.4
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 6.2e-10 69.3 163 33.7
Gohir.D12G185200 Gossypium hirsutum HOM05D004287 ORTHO05D004569 8.2e-10 68.9 219 30.6
Gorai.008G198700 Gossypium raimondii HOM05D008195 ORTHO05D000743 8.2e-10 68.9 175 35.4
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 8.2e-10 68.9 210 29.5
unitig_749.g13437 Utricularia gibba HOM05D008195 ORTHO05D000743 8.2e-10 68.9 210 26.2
Gohir.D12G185300 Gossypium hirsutum HOM05D008195 ORTHO05D000743 1.1e-09 68.6 177 33.3
Gorai.008G198600 Gossypium raimondii HOM05D004287 ORTHO05D004569 1.1e-09 68.6 219 30.6
Prupe.5G204200 Prunus persica HOM05D007909 ORTHO05D000743 1.4e-09 68.2 187 30.5
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 1.4e-09 68.2 122 32.8
FAN17G0179 Fragaria x ananassa HOM05D000009 ORTHO05D000008 4.1e-09 66.6 261 28.4
HanXRQChr02g0044731 Helianthus annuus HOM05D001093 ORTHO05D000743 6.9e-09 65.9 124 30.6
Thecc.03G101000 Theobroma cacao HOM05D007909 ORTHO05D000743 6.9e-09 65.9 251 29.5
COL.COLO4_06865 Corchorus olitorius HOM05D007909 ORTHO05D000743 9.0e-09 65.5 217 31.8
Gohir.A12G182300 Gossypium hirsutum HOM05D004287 ORTHO05D004569 9.0e-09 65.5 219 31.5
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 9.0e-09 65.5 167 32.3
Hund09906 Selenicereus undatus HOM05D009441 ORTHO05D010605 1.2e-08 65.1 137 35.8
HPP92_020444 Vanilla planifolia HOM05D001093 ORTHO05D000743 1.2e-08 65.1 130 33.8
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 1.5e-08 64.7 149 30.9
Haze_08239 Corylus avellana HOM05D001093 ORTHO05D000743 1.5e-08 64.7 102 31.4
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.6e-08 63.9 166 32.5
COL.COLO4_17047 Corchorus olitorius HOM05D001093 ORTHO05D000743 3.4e-08 63.5 66 40.9
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 3.4e-08 63.5 149 31.5
Sabra03G0060600 Salix brachista HOM05D001093 ORTHO05D000743 5.8e-08 62.8 83 32.5
Cfa012430 Carpinus fangiana HOM05D001093 ORTHO05D000743 1.0e-07 62.0 144 26.4
Potri.003G091000 Populus trichocarpa HOM05D001093 ORTHO05D000743 1.0e-07 62.0 50 46.0
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 1.3e-07 61.6 171 27.5
Hund11240 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.3e-07 61.6 81 37.0
CsaV3_1G033720 Cucumis sativus L. HOM05D034807 ORTHO05D034786 1.7e-07 61.2 49 51.0
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 1.7e-07 61.2 57 50.9
Duzib205G0279 Durio zibethinus HOM05D001093 ORTHO05D000743 1.7e-07 61.2 51 47.1
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 1.7e-07 61.2 198 24.2
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.7e-07 61.2 196 28.6
Zm00001eb268880 Zea mays HOM05D001093 ORTHO05D000743 1.7e-07 61.2 147 27.9
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 2.2e-07 60.8 149 31.5
PSO801G0246 Papaver somniferum HOM05D001093 ORTHO05D000743 2.2e-07 60.8 207 27.5
Ah.12g055000 Amaranthus hybridus HOM05D001093 ORTHO05D000743 2.9e-07 60.5 69 39.1
ClCG04G011830 Citrullus lanatus HOM05D000020 ORTHO05D000743 2.9e-07 60.5 177 29.9
Gohir.A12G208600 Gossypium hirsutum HOM05D001093 ORTHO05D000743 2.9e-07 60.5 51 47.1
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 2.9e-07 60.5 53 50.9
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.9e-07 60.5 87 35.6
PSO339G4557 Papaver somniferum HOM05D001093 ORTHO05D000743 3.8e-07 60.1 144 31.9
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 5.0e-07 59.7 203 29.6
Thecc.03G228500 Theobroma cacao HOM05D001093 ORTHO05D000743 5.0e-07 59.7 50 46.0
CSS0022126 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 6.5e-07 59.3 50 48.0
CSS0033439 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 6.5e-07 59.3 50 48.0
Duzib068G1103 Durio zibethinus HOM05D001093 ORTHO05D000743 6.5e-07 59.3 51 45.1
Duzib106G0988 Durio zibethinus HOM05D001093 ORTHO05D000743 6.5e-07 59.3 178 24.7
FvH4_5g13930 Fragaria vesca HOM05D007909 ORTHO05D000743 6.5e-07 59.3 195 30.8
Nitab4.5_0001485g0150 Nicotiana tabacum HOM05D008195 ORTHO05D000743 6.5e-07 59.3 161 31.1
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 6.5e-07 59.3 118 35.6
Gohir.D12G211200 Gossypium hirsutum HOM05D001093 ORTHO05D000743 8.4e-07 58.9 186 26.3
MD06G1202200 Malus domestica HOM05D007909 ORTHO05D000743 8.4e-07 58.9 178 30.3
Gorai.008G226700 Gossypium raimondii HOM05D001093 ORTHO05D000743 1.1e-06 58.5 186 26.3
RcHm_v2.0_Chr7g0183021 Rosa chinensis HOM05D007909 ORTHO05D000743 1.1e-06 58.5 182 30.2
Hund14401 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.1e-06 58.5 66 36.4
AL8G37760 Arabidopsis lyrata HOM05D007909 ORTHO05D000743 1.4e-06 58.2 187 27.8
FvH4_7g34220 Fragaria vesca HOM05D001093 ORTHO05D000743 1.9e-06 57.8 48 45.8
FAN01G2535 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.9e-06 57.8 48 45.8
FAN03G3313 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.9e-06 57.8 48 45.8
FAN10G1498 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.9e-06 57.8 48 45.8
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 1.9e-06 57.8 182 26.9
Prupe.5G038800 Prunus persica HOM05D001093 ORTHO05D000743 2.5e-06 57.4 49 44.9
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 2.5e-06 57.4 151 25.2
MELO3C002025.2 Cucumis melo HOM05D007909 ORTHO05D000743 3.2e-06 57.0 132 31.8
Sed0028074 Sechium edule HOM05D007909 ORTHO05D000743 3.2e-06 57.0 132 32.6
Os11g0292050 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 5.5e-06 56.2 77 32.5
Duzib084G1408 Durio zibethinus HOM05D001093 ORTHO05D000743 7.2e-06 55.8 166 27.7
EL10Ac5g12127 Beta vulgaris HOM05D001093 ORTHO05D000743 9.3e-06 55.5 68 35.3
Carub.0008s2179 Capsella rubella HOM05D007909 ORTHO05D000743 9.3e-06 55.5 231 25.5
Sc07g0008720 Simmondsia chinensis HOM05D001093 ORTHO05D000743 9.3e-06 55.5 49 44.9


User provided reference genes

Program Settings