Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 4.9e-165 584.3 280 100.0
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 4.3e-161 571.2 280 98.2
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 9.2e-140 500.4 273 83.9
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 5.1e-138 494.6 273 82.8
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 8.6e-138 493.8 273 82.8
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 3.3e-137 491.9 278 81.3
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 3.3e-137 491.9 273 82.4
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 1.6e-136 489.6 272 82.7
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.6e-136 489.6 273 81.7
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.6e-136 489.6 273 81.7
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 4.7e-136 488.0 278 80.6
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 8.1e-136 487.3 274 83.2
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.1e-135 486.9 278 79.9
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 1.4e-135 486.5 275 82.2
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 1.8e-135 486.1 278 80.6
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 4.0e-135 485.0 275 81.5
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 6.8e-135 484.2 278 80.2
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.5e-134 483.0 272 81.2
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 7.6e-134 480.7 274 80.7
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 7.6e-134 480.7 280 80.0
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.3e-133 479.9 275 81.8
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.3e-133 479.9 278 80.9
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.7e-133 479.6 275 79.6
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 2.2e-133 479.2 280 79.6
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.4e-132 476.5 272 81.2
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 4.2e-132 474.9 278 79.5
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 4.2e-132 474.9 278 78.4
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 4.2e-132 474.9 273 80.6
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 7.1e-132 474.2 294 75.9
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 7.1e-132 474.2 311 72.3
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 7.1e-132 474.2 276 78.6
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 9.2e-132 473.8 275 78.9
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 9.2e-132 473.8 275 79.6
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.6e-131 473.0 276 78.6
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 1.6e-131 473.0 278 78.1
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 2.1e-131 472.6 278 76.6
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 4.6e-131 471.5 278 77.3
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 7.8e-131 470.7 275 78.9
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.3e-130 469.9 278 77.7
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 2.3e-130 469.2 275 79.6
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 3.0e-130 468.8 275 77.5
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 6.6e-130 467.6 273 79.1
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 6.6e-130 467.6 273 79.5
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 6.6e-130 467.6 273 79.5
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 8.7e-130 467.2 277 77.3
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 8.7e-130 467.2 273 76.9
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 8.7e-130 467.2 276 80.1
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 1.1e-129 466.8 275 77.8
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 1.9e-129 466.1 273 76.9
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.9e-129 466.1 273 78.0
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.9e-129 466.1 275 78.5
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.3e-129 465.3 278 77.3
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 3.3e-129 465.3 272 79.4
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 5.6e-129 464.5 301 72.8
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 7.3e-129 464.2 273 76.6
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 9.6e-129 463.8 273 76.9
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 9.6e-129 463.8 273 76.6
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.3e-128 463.4 278 75.5
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 3.6e-128 461.8 277 76.5
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 6.2e-128 461.1 273 76.6
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 1.1e-127 460.3 272 76.8
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 1.1e-127 460.3 278 75.5
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 1.8e-127 459.5 279 75.3
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 2.4e-127 459.1 284 73.9
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 2.4e-127 459.1 272 77.6
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 2.4e-127 459.1 277 75.8
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.1e-127 458.8 273 75.8
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 4.0e-127 458.4 272 77.6
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 4.0e-127 458.4 272 77.2
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 4.0e-127 458.4 275 75.3
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 5.3e-127 458.0 272 77.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 6.9e-127 457.6 273 76.2
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 6.9e-127 457.6 274 75.9
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 1.2e-126 456.8 273 76.2
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 1.5e-126 456.4 272 76.8
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.0e-126 456.1 273 75.8
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 2.2e-125 452.6 272 76.1
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 2.9e-125 452.2 278 75.9
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 3.8e-125 451.8 273 74.0
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 3.8e-125 451.8 273 74.0
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.4e-125 451.1 259 80.3
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 8.4e-125 450.7 275 77.1
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 5.4e-124 448.0 280 75.7
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.1e-123 446.0 275 76.0
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 4.6e-123 444.9 316 67.1
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 1.7e-122 443.0 280 74.6
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 3.9e-122 441.8 261 78.2
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 5.1e-122 441.4 275 74.9
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 8.7e-122 440.7 273 72.9
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.1e-121 440.3 272 73.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 1.3e-120 436.8 273 72.2
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 3.6e-120 435.3 273 71.8
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 3.6e-120 435.3 273 74.7
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 6.2e-120 434.5 313 66.8
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.5e-118 429.9 271 74.5
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 7.6e-118 427.6 278 72.3
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 2.9e-117 425.6 273 72.2
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 2.4e-116 422.5 276 69.9
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 4.2e-116 421.8 291 68.4
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 1.6e-115 419.9 269 72.9
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 3.9e-114 415.2 273 71.8
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 5.1e-114 414.8 275 69.1
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 8.7e-114 414.1 273 70.0
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 7.4e-113 411.0 239 79.9
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.6e-112 409.8 303 66.3
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 1.5e-110 403.3 356 57.6
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.3e-104 383.6 221 81.9
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.4e-103 379.4 243 72.0
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 3.2e-100 369.0 273 65.6
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.6e-99 366.7 215 78.1
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 2.1e-99 366.3 291 61.5
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.8e-96 355.9 201 81.6
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 5.3e-95 351.7 196 82.1
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.2e-94 350.5 276 58.7
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.0e-93 347.4 213 74.2
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 8.5e-93 344.4 277 59.2
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 5.1e-90 335.1 274 58.4
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.5e-85 318.2 215 71.6
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 1.6e-83 313.5 189 77.8
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 1.6e-83 313.5 189 77.8
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.4e-79 300.4 229 63.8
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 5.3e-79 298.5 273 54.9
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.6e-75 287.0 228 62.7
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 1.6e-70 270.4 290 50.7
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 2.6e-65 253.1 151 76.8
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.0e-62 243.4 156 73.7
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 3.2e-60 236.1 184 60.3
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 9.8e-57 224.6 214 49.5
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 4.5e-54 215.7 136 72.1
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 4.5e-54 215.7 267 43.8
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.0e-45 188.0 193 49.7
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.2e-38 164.5 274 37.6
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 7.8e-38 161.8 97 74.2
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 1.7e-37 160.6 213 40.4
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 2.3e-29 133.7 101 59.4
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 9.5e-28 128.3 81 70.4
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 9.3e-15 85.1 66 56.1
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 4.6e-14 82.8 38 86.8
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 1.6e-11 74.3 45 68.9


User provided reference genes

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