Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 5.5e-53 210.7 106 100.0
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 4.9e-33 144.4 182 50.0
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 1.8e-32 142.5 181 49.2
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 4.0e-27 124.8 180 42.2
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 3.4e-26 121.7 184 41.8
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 3.4e-26 121.7 180 42.8
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 9.8e-26 120.2 138 47.8
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.3e-25 119.8 184 41.3
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 2.2e-25 119.0 181 41.4
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 2.9e-25 118.6 182 42.3
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 6.4e-25 117.5 180 40.6
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 6.4e-25 117.5 180 40.6
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 8.3e-25 117.1 180 41.1
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 8.3e-25 117.1 180 41.1
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 8.3e-25 117.1 180 41.1
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 1.1e-24 116.7 180 39.4
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.1e-24 116.7 184 40.8
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.4e-24 116.3 183 39.3
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.4e-24 115.5 184 42.9
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 2.4e-24 115.5 184 39.7
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 4.1e-24 114.8 182 41.8
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 4.1e-24 114.8 180 40.0
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 5.4e-24 114.4 180 40.0
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 5.4e-24 114.4 184 41.3
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 5.4e-24 114.4 184 39.7
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 7.0e-24 114.0 183 38.8
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 1.2e-23 113.2 182 40.1
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 1.2e-23 113.2 181 39.8
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.6e-23 112.8 184 39.1
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 2.0e-23 112.5 180 39.4
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 2.0e-23 112.5 184 41.3
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.0e-23 112.5 138 47.1
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 2.7e-23 112.1 184 40.8
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 2.7e-23 112.1 184 40.8
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 2.7e-23 112.1 180 39.4
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.7e-23 112.1 181 39.8
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 2.7e-23 112.1 181 38.1
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 2.7e-23 112.1 180 39.4
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 2.7e-23 112.1 180 39.4
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.7e-23 112.1 180 38.9
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.7e-23 112.1 180 39.4
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 2.7e-23 112.1 182 39.6
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 3.5e-23 111.7 181 40.9
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 3.5e-23 111.7 184 40.8
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 3.5e-23 111.7 180 38.9
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 3.5e-23 111.7 179 39.7
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.6e-23 111.3 179 39.1
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 4.6e-23 111.3 179 39.1
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 6.0e-23 110.9 181 38.7
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 6.0e-23 110.9 180 40.0
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 7.8e-23 110.5 180 39.4
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.0e-22 110.2 184 40.8
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 1.0e-22 110.2 184 40.2
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.0e-22 110.2 184 40.2
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.0e-22 110.2 180 38.3
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.0e-22 110.2 181 37.6
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 1.0e-22 110.2 180 38.9
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.0e-22 110.2 180 39.4
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.3e-22 109.8 181 38.7
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 1.3e-22 109.8 180 38.3
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 1.3e-22 109.8 181 38.1
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.7e-22 109.4 184 40.2
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.7e-22 109.4 182 38.5
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.7e-22 109.4 181 39.2
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 2.3e-22 109.0 184 39.7
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 2.3e-22 109.0 184 39.7
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 2.3e-22 109.0 181 40.3
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 2.3e-22 109.0 184 39.7
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.3e-22 109.0 181 39.2
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.3e-22 109.0 180 37.8
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 3.0e-22 108.6 184 40.2
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 3.0e-22 108.6 181 38.7
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.0e-22 108.6 181 39.2
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 3.9e-22 108.2 180 37.2
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 3.9e-22 108.2 181 38.1
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 3.9e-22 108.2 180 38.3
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 3.9e-22 108.2 180 38.3
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 3.9e-22 108.2 180 39.4
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 5.0e-22 107.8 185 40.0
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 5.0e-22 107.8 180 37.8
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 5.0e-22 107.8 180 37.8
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 5.0e-22 107.8 184 40.2
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 5.0e-22 107.8 180 38.9
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 5.0e-22 107.8 173 40.5
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 5.0e-22 107.8 180 38.9
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 5.0e-22 107.8 179 38.0
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 5.0e-22 107.8 180 39.4
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 8.6e-22 107.1 181 38.1
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 8.6e-22 107.1 180 37.8
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.1e-21 106.7 184 39.7
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 1.1e-21 106.7 180 37.2
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.1e-21 106.7 180 38.3
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-21 106.3 180 37.8
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.5e-21 106.3 180 37.2
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 1.9e-21 105.9 184 39.1
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.9e-21 105.9 82 64.6
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 2.5e-21 105.5 180 37.2
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 2.5e-21 105.5 179 38.0
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 2.5e-21 105.5 180 37.8
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 3.3e-21 105.1 180 37.2
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 3.3e-21 105.1 180 37.2
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 3.3e-21 105.1 180 38.3
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 3.3e-21 105.1 180 37.2
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 4.3e-21 104.8 180 37.8
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 5.6e-21 104.4 180 37.2
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 5.6e-21 104.4 180 37.8
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 7.3e-21 104.0 184 36.4
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 7.3e-21 104.0 182 37.9
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 7.3e-21 104.0 181 39.2
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 9.5e-21 103.6 181 39.2
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 1.2e-20 103.2 82 63.4
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.6e-20 102.8 171 37.4
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 2.1e-20 102.4 181 38.7
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 2.1e-20 102.4 180 36.7
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 3.6e-20 101.7 82 61.0
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.7e-20 101.3 180 37.8
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.7e-20 101.3 180 37.2
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 6.2e-20 100.9 170 39.4
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 6.2e-20 100.9 182 37.9
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 8.1e-20 100.5 80 65.0
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 1.1e-19 100.1 80 58.8
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 1.1e-19 100.1 180 35.0
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 1.1e-19 100.1 180 35.6
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.1e-19 100.1 84 60.7
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.8e-19 99.4 182 37.4
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 2.3e-19 99.0 82 62.2
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 8.9e-19 97.1 184 35.3
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.5e-18 96.3 82 58.5
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 1.5e-18 96.3 82 57.3
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 2.0e-18 95.9 84 58.3
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 5.8e-18 94.4 178 36.0
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 9.8e-18 93.6 190 34.7
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 1.7e-17 92.8 74 67.6
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 1.7e-17 92.8 194 34.5
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 2.2e-17 92.4 185 33.0
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 4.9e-17 91.3 83 55.4
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 6.4e-17 90.9 181 35.4
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.1e-16 90.1 179 35.8
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 2.4e-16 89.0 66 69.7
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 7.1e-16 87.4 83 53.0
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.2e-15 86.7 185 32.4
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.6e-15 86.3 188 33.0
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 2.1e-15 85.9 70 67.1
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 3.5e-15 85.1 86 52.3
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 4.6e-15 84.7 187 33.2
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.0e-14 83.6 75 57.3
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.7e-14 82.8 80 56.2
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 3.9e-14 81.6 86 51.2
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 8.6e-14 80.5 91 51.6
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 1.1e-13 80.1 89 49.4
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.5e-13 79.7 84 51.2
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 7.3e-13 77.4 68 61.8
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 1.6e-12 76.3 75 56.0
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 1.6e-12 76.3 82 50.0
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.4e-11 73.2 132 36.4
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 1.8e-11 72.8 105 44.8
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.5e-10 69.7 183 29.5
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.8e-09 65.1 45 66.7
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 1.4e-08 63.2 77 41.6
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 3.2e-08 62.0 47 61.7
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 7.1e-08 60.8 43 67.4
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 2.7e-07 58.9 58 53.4
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 3.5e-07 58.5 79 41.8
Actinidia02180 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.0e-06 55.5 58 50.0
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 3.0e-06 55.5 75 44.0


User provided reference genes

Program Settings