Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.8e-183 645.2 332 100.0
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.2e-106 390.6 343 64.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.3e-100 370.5 340 58.5
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 4.2e-99 365.5 340 60.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.4e-97 360.5 346 59.5
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.3e-97 359.8 342 60.5
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.3e-97 359.8 350 59.7
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 4.4e-96 355.5 373 55.8
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 7.7e-93 344.7 341 58.7
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.0e-92 344.4 346 60.7
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 5.0e-92 342.0 345 57.7
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.9e-91 340.1 341 58.7
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 2.5e-91 339.7 367 57.5
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 3.2e-91 339.3 343 58.3
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 4.2e-91 339.0 352 58.2
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.2e-90 337.4 341 58.4
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.2e-90 337.4 340 59.1
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 6.1e-90 335.1 351 57.3
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.0e-89 334.3 214 74.3
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.8e-89 333.6 347 54.8
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.1e-88 330.9 294 59.5
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 2.0e-88 330.1 347 56.8
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.3e-88 329.3 358 57.0
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 5.7e-88 328.6 331 58.6
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 7.4e-88 328.2 339 57.5
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 9.7e-88 327.8 343 54.2
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.7e-87 327.0 334 57.5
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 2.8e-87 326.2 349 55.6
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 3.7e-87 325.9 340 56.8
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.4e-86 323.9 339 57.5
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.4e-86 323.9 340 56.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-86 323.6 339 57.8
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 2.4e-86 323.2 353 54.1
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.1e-86 322.4 350 55.7
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 5.3e-86 322.0 341 55.1
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 9.1e-86 321.2 335 56.7
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 9.1e-86 321.2 335 56.7
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 4.5e-85 318.9 346 55.8
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.0e-84 317.8 337 55.8
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.3e-84 317.4 256 64.5
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-84 317.0 334 57.8
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.7e-84 317.0 334 57.8
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-84 317.0 337 57.6
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.9e-84 316.2 351 53.3
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.8e-84 315.8 326 55.8
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 5.0e-84 315.5 375 51.2
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 3.2e-83 312.8 347 54.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.1e-82 310.1 303 58.1
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 2.1e-82 310.1 333 55.3
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.0e-81 307.8 345 52.8
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.4e-81 307.4 340 54.1
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.4e-81 307.4 335 54.9
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.3e-81 306.6 350 55.7
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.0e-81 305.8 339 54.6
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.2e-80 304.3 342 53.2
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.6e-80 303.1 334 53.6
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 2.6e-80 303.1 337 53.1
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.4e-80 302.4 328 54.6
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 9.7e-80 301.2 227 70.5
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.3e-79 300.8 334 54.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 2.2e-79 300.1 336 54.2
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 8.2e-79 298.1 336 51.5
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.1e-78 297.7 346 52.9
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.4e-78 297.4 343 53.6
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 3.5e-77 292.7 229 65.9
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.7e-76 290.4 316 54.1
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.2e-76 290.0 230 66.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.2e-76 290.0 233 64.8
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 5.0e-76 288.9 206 70.9
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.5e-75 287.3 210 66.7
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 5.5e-75 285.4 296 57.1
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.2e-74 284.3 300 54.3
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-72 277.7 345 51.9
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.2e-72 277.7 282 54.3
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 3.4e-72 276.2 320 52.5
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.4e-72 275.8 336 52.1
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.7e-71 273.9 341 51.6
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.8e-71 272.3 348 50.6
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.8e-71 272.3 304 50.0
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.1e-70 271.2 224 60.7
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.1e-70 271.2 343 50.7
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 9.1e-70 268.1 310 53.2
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 7.7e-69 265.0 349 47.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.5e-67 260.8 208 63.9
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.5e-67 260.0 342 46.5
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 3.3e-67 259.6 342 46.2
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.2e-67 258.5 347 49.3
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.5e-64 248.4 348 48.3
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 9.8e-64 248.1 208 58.7
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.0e-62 241.9 344 45.3
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.2e-61 241.1 330 47.6
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.7e-61 240.0 343 45.2
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.7e-61 240.0 212 61.8
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.3e-60 237.7 338 47.0
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.8e-58 229.9 243 48.6
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 6.8e-57 225.3 335 41.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 2.0e-56 223.8 335 42.4
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 2.2e-55 220.3 198 57.1
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.2e-54 216.5 210 53.8
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.7e-53 213.4 209 58.4
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-52 210.7 242 48.8
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 5.2e-49 199.1 308 44.5
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.3e-47 194.5 269 42.8
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-47 194.1 131 75.6
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.7e-47 193.0 249 46.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 6.4e-47 192.2 269 45.0
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.1e-46 189.5 213 48.4
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.2e-45 188.0 197 49.7
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.7e-45 186.8 134 70.9
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 4.6e-45 186.0 275 44.4
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 4.3e-43 179.5 352 40.9
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 5.6e-43 179.1 218 47.2
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.6e-42 177.6 136 65.4
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.6e-42 176.4 204 44.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.8e-41 174.1 210 44.8
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 3.1e-41 173.3 159 55.3
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.0e-40 170.6 201 44.8
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.4e-40 169.9 235 44.7
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 7.5e-40 168.7 223 47.5
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 9.9e-40 168.3 170 55.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.3e-39 167.9 198 46.5
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 7.8e-37 158.7 201 42.8
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.3e-36 157.9 217 48.8
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 2.3e-36 157.1 353 34.8
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.5e-35 154.5 145 53.8
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 4.3e-35 152.9 201 42.3
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.6e-35 152.5 346 36.1
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.8e-34 150.2 166 45.8
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-33 148.3 121 65.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 2.4e-33 147.1 206 40.3
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.6e-32 143.7 177 47.5
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.6e-32 143.7 324 34.3
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.4e-32 143.3 101 70.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.7e-31 141.0 285 34.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-30 137.9 115 62.6
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.2e-30 136.7 215 47.4
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.5e-29 133.3 150 46.7
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.9e-27 127.5 93 66.7
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-26 124.4 76 80.3
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.0e-24 117.5 74 74.3
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 7.8e-21 105.5 70 71.4
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 8.7e-20 102.1 176 39.2
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 5.3e-17 92.8 86 58.1
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 6.9e-17 92.4 73 67.1
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-15 85.5 100 38.0
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.3e-12 78.2 96 43.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.1e-09 67.0 43 72.1
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 9.9e-08 62.0 62 51.6


User provided reference genes

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