Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03210 Coffea canephora HOM05D012094 ORTHO05D009761 7.8e-193 677.2 398 100.0
Dinv03635 Davidia involucrata HOM05D009013 ORTHO05D009761 7.7e-31 139.0 360 32.8
Nitab4.5_0003714g0090 Nicotiana tabacum HOM05D012094 ORTHO05D011876 5.3e-16 89.7 383 29.0
Ciclev10017480m.g Citrus clementina HOM05D009852 ORTHO05D009761 2.9e-14 84.0 399 31.6
CSS0047309 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 8.5e-14 82.4 400 28.2
CSS0045433 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 2.5e-13 80.9 437 27.0
DCAR_007913 Daucus carota HOM05D009013 ORTHO05D009761 2.1e-12 77.8 296 27.7
Oeu021526.1 Olea europaea HOM05D012266 ORTHO05D011876 2.7e-12 77.4 356 27.5
Oeu046855.1 Olea europaea HOM05D012266 ORTHO05D011876 2.7e-12 77.4 407 31.0
Actinidia27190 Actinidia chinensis HOM05D014645 ORTHO05D009761 6.1e-12 76.3 256 30.1
Nitab4.5_0001283g0020 Nicotiana tabacum HOM05D012094 ORTHO05D011876 1.4e-11 75.1 387 28.4
Actinidia39545 Actinidia chinensis HOM05D014645 ORTHO05D009761 1.8e-11 74.7 256 29.7
Sopen02g020380 Solanum pennellii HOM05D012094 ORTHO05D011876 2.3e-11 74.3 396 27.0
Actinidia07666 Actinidia chinensis HOM05D014645 ORTHO05D009761 3.0e-11 73.9 303 29.7
MSTRG.13241 Avicennia marina HOM05D012266 ORTHO05D011876 2.0e-10 71.2 300 25.3
Lj6g0000102 Lotus japonicus HOM05D009013 ORTHO05D009761 7.5e-10 69.3 81 45.7
Hma1.2p1_0015F.1_g010420 Hydrangea macrophylla HOM05D009013 ORTHO05D009761 9.8e-10 68.9 343 27.4
Sopen03g001860 Solanum pennellii HOM05D012094 ORTHO05D011876 1.3e-09 68.6 124 37.9
QL05p060720 Quercus lobata HOM05D009013 ORTHO05D009761 1.7e-09 68.2 366 26.0
EL10Ac8g19799 Beta vulgaris HOM05D018558 ORTHO05D018254 2.2e-09 67.8 46 58.7
Lalb_Chr12g0204801 Lupinus albus HOM05D009013 ORTHO05D009761 2.2e-09 67.8 353 27.8
Manes.17G064400 Manihot esculenta HOM05D009852 ORTHO05D009761 2.8e-09 67.4 382 25.4
PGSC0003DMG400003088 Solanum tuberosum HOM05D012094 ORTHO05D011876 2.8e-09 67.4 408 25.2
Peaxi162Scf00121g01412 Petunia axillaris HOM05D012094 ORTHO05D011876 4.8e-09 66.6 209 30.6
Dinv32301 Davidia involucrata HOM05D009013 ORTHO05D009761 1.1e-08 65.5 236 28.4
CiPaw.09G129900 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.4e-08 65.1 124 33.1
Lj4g0005206 Lotus japonicus HOM05D009013 ORTHO05D009761 4.1e-08 63.5 353 28.6
Manes.15G116600 Manihot esculenta HOM05D009852 ORTHO05D009761 7.0e-08 62.8 372 27.4
Actinidia19483 Actinidia chinensis HOM05D014645 ORTHO05D009761 9.1e-08 62.4 387 26.1
Oeu001056.1 Olea europaea HOM05D012266 ORTHO05D011876 9.1e-08 62.4 357 25.2
Ah.09g232960 Amaranthus hybridus HOM05D018558 ORTHO05D018254 1.2e-07 62.0 46 54.3
Rhsim02G0193600 Rhododendron simsii HOM05D014645 ORTHO05D009761 1.6e-07 61.6 361 26.0
Lalb_Chr07g0186121 Lupinus albus HOM05D009013 ORTHO05D009761 2.0e-07 61.2 352 27.6
CANSAT35G0309 Cannabis sativa HOM05D009013 ORTHO05D009761 2.7e-07 60.8 154 29.2
DCAR_003953 Daucus carota HOM05D009013 ORTHO05D009761 3.5e-07 60.5 366 24.9
Nitab4.5_0000206g0120 Nicotiana tabacum HOM05D012094 ORTHO05D011876 3.5e-07 60.5 159 34.0
Haze_05479 Corylus avellana HOM05D009013 ORTHO05D009761 4.5e-07 60.1 350 27.1
Lalb_Chr13g0295461 Lupinus albus HOM05D009013 ORTHO05D009761 4.5e-07 60.1 245 29.0
Lalb_Chr23g0275971 Lupinus albus HOM05D009013 ORTHO05D009761 4.5e-07 60.1 276 25.0
Nitab4.5_0001826g0030 Nicotiana tabacum HOM05D012094 ORTHO05D011876 5.9e-07 59.7 192 32.8
Eucgr.D00345 Eucalyptus grandis HOM05D014736 ORTHO05D009761 7.7e-07 59.3 49 61.2
Glyma.13G051300 Glycine max HOM05D009013 ORTHO05D009761 7.7e-07 59.3 48 56.2
Atru.chr10.1414 Acer truncatum HOM05D009852 ORTHO05D009761 1.3e-06 58.5 361 26.3
arahy.Tifrunner.gnm1.ann1.3YWF5K Arachis hypogaea HOM05D009013 ORTHO05D009761 1.7e-06 58.2 50 54.0
arahy.Tifrunner.gnm1.ann1.5V604V Arachis hypogaea HOM05D009013 ORTHO05D009761 1.7e-06 58.2 50 54.0
TPR.G31355 Trifolium pratense HOM05D009013 ORTHO05D009761 2.2e-06 57.8 174 29.9
Phvul.009G214600 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 2.9e-06 57.4 308 23.7
Gohir.D10G032500 Gossypium hirsutum HOM05D009852 ORTHO05D009761 3.8e-06 57.0 51 56.9
Gorai.011G034400 Gossypium raimondii HOM05D009852 ORTHO05D009761 3.8e-06 57.0 51 56.9
Glyma.08G121600 Glycine max HOM05D009013 ORTHO05D009761 5.0e-06 56.6 229 29.3
Gorai.010G164100 Gossypium raimondii HOM05D009852 ORTHO05D009761 5.0e-06 56.6 277 25.3
VMungo0251G0903 Vigna mungo HOM05D009013 ORTHO05D009761 5.0e-06 56.6 168 29.8
Ah.14g086770 Amaranthus hybridus HOM05D018558 ORTHO05D018254 6.5e-06 56.2 172 29.7
FvH4_3g06440 Fragaria vesca HOM05D014736 ORTHO05D009761 6.5e-06 56.2 50 52.0
FAN11G2258 Fragaria x ananassa HOM05D014736 ORTHO05D009761 6.5e-06 56.2 50 52.0
Glyma.15G195700 Glycine max HOM05D009013 ORTHO05D009761 6.5e-06 56.2 48 52.1
Psat1g020440 Pisum sativum HOM05D009013 ORTHO05D009761 8.5e-06 55.8 51 54.9


User provided reference genes

Program Settings