Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 5.9e-67 257.3 121 100.0
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 5.9e-67 257.3 121 100.0
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 1.8e-52 209.1 108 88.9
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.2e-51 206.5 108 86.1
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.5e-51 204.9 108 88.0
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 7.7e-51 203.8 108 86.1
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.0e-50 203.4 108 86.1
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.0e-50 203.4 108 84.3
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.7e-50 202.6 108 87.0
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.7e-50 202.6 108 86.1
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.7e-50 202.6 108 86.1
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.7e-50 202.6 108 85.2
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.7e-50 202.6 108 86.1
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.7e-50 202.6 108 86.1
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 85.2
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 85.2
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 85.2
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 84.3
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 85.2
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 85.2
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 2.2e-50 202.2 108 86.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 2.9e-50 201.8 108 83.3
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 2.9e-50 201.8 108 85.2
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.9e-50 201.8 108 86.1
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 2.9e-50 201.8 108 83.3
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.9e-50 201.8 108 85.2
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.9e-50 201.8 108 85.2
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.8e-50 201.4 108 83.3
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.8e-50 201.4 108 85.2
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 3.8e-50 201.4 108 85.2
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.8e-50 201.4 108 85.2
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 85.2
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 84.3
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 86.1
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 84.3
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 5.0e-50 201.1 108 86.1
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 6.5e-50 200.7 108 85.2
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 6.5e-50 200.7 108 85.2
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 6.5e-50 200.7 108 82.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 8.5e-50 200.3 108 85.2
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.5e-50 200.3 108 85.2
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 8.5e-50 200.3 108 85.2
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 8.5e-50 200.3 108 82.4
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.1e-49 199.9 108 83.3
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-49 199.9 108 85.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.1e-49 199.9 108 83.3
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.1e-49 199.9 108 84.3
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.1e-49 199.9 108 84.3
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-49 199.5 108 84.3
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.5e-49 199.5 108 84.3
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.5e-49 199.5 108 83.3
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.5e-49 199.5 108 83.3
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 83.3
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 83.3
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 84.3
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 85.2
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 85.2
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 83.3
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 83.3
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.9e-49 199.1 108 85.2
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.2e-49 198.4 108 83.3
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.2e-49 198.4 108 83.3
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 3.2e-49 198.4 108 84.3
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.2e-49 198.4 108 84.3
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.2e-49 198.4 108 82.4
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.2e-49 198.0 108 83.3
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.5e-49 197.6 108 81.5
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 5.5e-49 197.6 108 82.4
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 5.5e-49 197.6 108 82.4
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 7.2e-49 197.2 108 82.4
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 9.4e-49 196.8 108 82.4
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 9.4e-49 196.8 108 83.3
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 9.4e-49 196.8 108 83.3
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 9.4e-49 196.8 108 82.4
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.2e-48 196.4 108 83.3
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.2e-48 196.4 108 81.5
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-48 196.4 108 82.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.2e-48 196.4 108 82.4
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.6e-48 196.1 108 82.4
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 2.1e-48 195.7 108 81.5
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 2.1e-48 195.7 108 81.5
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.7e-48 195.3 108 80.6
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 2.7e-48 195.3 108 82.4
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.7e-48 194.5 108 80.6
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 4.7e-48 194.5 108 80.6
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 4.7e-48 194.5 108 81.5
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 4.7e-48 194.5 108 82.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 6.1e-48 194.1 108 82.4
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 8.0e-48 193.7 108 82.4
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.4e-47 193.0 108 78.7
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.4e-47 193.0 108 80.6
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.8e-47 192.6 108 80.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.3e-47 192.2 108 79.6
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 3.0e-47 191.8 108 77.8
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 4.0e-47 191.4 108 80.6
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.2e-47 191.0 108 80.6
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 5.2e-47 191.0 113 79.6
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.2e-47 191.0 108 78.7
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 8.8e-47 190.3 108 79.6
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 8.8e-47 190.3 113 79.6
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.2e-46 189.9 108 79.6
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 2.0e-46 189.1 108 77.8
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 5.7e-46 187.6 108 75.9
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 9.8e-46 186.8 109 81.7
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.7e-45 186.0 108 78.7
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 2.2e-45 185.7 108 77.8
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 3.1e-44 181.8 108 74.1
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.2e-43 179.9 108 73.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.7e-43 177.2 108 73.1
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.0e-42 176.8 109 76.1
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.9e-42 175.3 108 72.2
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 8.5e-42 173.7 111 71.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.6e-40 169.5 91 83.5
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.8e-40 168.7 110 73.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 3.0e-39 165.2 108 72.2
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.0e-39 164.9 108 71.3
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 6.8e-39 164.1 108 73.1
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 6.8e-39 164.1 108 72.2
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.0e-38 162.5 108 72.2
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 7.5e-38 160.6 108 72.2
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.3e-37 159.8 108 70.4
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-37 159.8 108 70.4
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.3e-37 159.8 168 50.6
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.8e-37 158.7 108 70.4
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.9e-37 157.9 108 69.4
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.9e-37 157.9 108 69.4
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.4e-36 155.6 108 67.6
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.3e-34 149.8 108 66.7
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.3e-34 149.8 108 65.7
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.7e-34 149.4 85 80.0
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 2.9e-34 148.7 81 82.7
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.5e-33 146.4 84 78.6
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 4.3e-33 144.8 108 65.7
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 6.1e-32 141.0 108 63.9
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.1e-32 141.0 88 73.9
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 5.2e-31 137.9 108 57.4
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 6.8e-31 137.5 111 60.4
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 1.5e-30 136.3 121 54.5
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 8.3e-29 130.6 71 84.5
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.1e-28 130.2 111 56.8
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 5.4e-28 127.9 70 84.3
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 7.3e-25 117.5 95 63.2
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.6e-22 109.0 70 70.0
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.3e-18 95.9 99 52.5
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 8.6e-18 94.0 70 64.3
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 3.9e-10 68.6 39 71.8
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 8.6e-10 67.4 52 57.7
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 4.0e-07 58.5 33 78.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 4.0e-07 58.5 33 78.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 4.0e-07 58.5 33 78.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.5e-06 56.6 33 75.8
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 3.4e-06 55.5 28 82.1


User provided reference genes

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