Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02620 Coffea canephora HOM05D003506 ORTHO05D004063 5.2e-57 224.2 114 100.0
Cc08_g04830 Coffea canephora HOM05D003506 ORTHO05D004063 8.9e-33 143.7 166 50.6
Cc08_g04930 Coffea canephora HOM05D003506 ORTHO05D004063 3.4e-32 141.7 166 51.2
Cc08_g04780 Coffea canephora HOM05D003506 ORTHO05D004063 4.3e-27 124.8 99 68.7
Cc00_g21830 Coffea canephora HOM05D003506 ORTHO05D004063 2.6e-24 115.5 105 61.9
Cc00_g10090 Coffea canephora HOM05D003506 ORTHO05D004063 4.6e-21 104.8 99 61.6
Dinv40460 Davidia involucrata HOM05D003506 ORTHO05D004063 6.9e-17 90.9 98 53.1
Cc05_g09100 Coffea canephora HOM05D003506 ORTHO05D004063 2.6e-16 89.0 98 51.0
ECA248G2101 Erigeron canadensis HOM05D003506 ORTHO05D004063 1.1e-14 83.6 106 41.5
Nn1g03848 Nelumbo nucifera HOM05D003506 ORTHO05D004063 2.1e-13 79.3 106 43.4
COL.COLO4_16912 Corchorus olitorius HOM05D003506 ORTHO05D004063 1.1e-11 73.6 96 40.6
DCAR_013527 Daucus carota HOM05D003506 ORTHO05D004063 2.5e-11 72.4 105 40.0
Lsat_1_v5_gn_1_124100 Lactuca sativa HOM05D003506 ORTHO05D004063 2.5e-11 72.4 98 41.8
Cc00_g22760 Coffea canephora HOM05D003506 ORTHO05D004063 4.3e-11 71.6 88 51.1
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 9.6e-11 70.5 105 37.1
BcaC09g51442 Brassica carinata HOM05D003506 ORTHO05D004063 9.6e-11 70.5 110 40.9
BolC1t01282H Brassica oleracea HOM05D003506 ORTHO05D004063 9.6e-11 70.5 110 40.9
HanXRQChr01g0003761 Helianthus annuus HOM05D003506 ORTHO05D004063 9.6e-11 70.5 98 38.8
PGR042G2042 Punica granatum HOM05D003506 ORTHO05D004063 9.6e-11 70.5 104 40.4
Cfa001536 Carpinus fangiana HOM05D003506 ORTHO05D004063 2.1e-10 69.3 106 36.8
C01p13080 Brassica napus HOM05D003506 ORTHO05D004063 2.8e-10 68.9 110 40.0
CSS0044487 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 3.6e-10 68.6 105 38.1
CARHR225950 Cardamine hirsuta HOM05D003506 ORTHO05D004063 3.6e-10 68.6 106 40.6
Cpa.g.sc27.152 Carica papaya HOM05D003506 ORTHO05D004063 3.6e-10 68.6 96 40.6
Aqoxy1G04209 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 4.8e-10 68.2 102 34.3
QL12p009886 Quercus lobata HOM05D003506 ORTHO05D004063 4.8e-10 68.2 106 39.6
QL12p010549 Quercus lobata HOM05D003506 ORTHO05D004063 4.8e-10 68.2 106 39.6
Thecc.03G315800 Theobroma cacao HOM05D003506 ORTHO05D004063 4.8e-10 68.2 105 35.2
CANSAT56G2852 Cannabis sativa HOM05D003506 ORTHO05D004063 6.2e-10 67.8 103 38.8
BraA01t01053Z Brassica rapa HOM05D003506 ORTHO05D004063 8.1e-10 67.4 110 40.0
Sp7g17770 Schrenkiella parvula HOM05D003506 ORTHO05D004063 8.1e-10 67.4 106 42.5
DCAR_009112 Daucus carota HOM05D003506 ORTHO05D004063 1.1e-09 67.0 81 42.0
BcaNung04011 Brassica carinata HOM05D003506 ORTHO05D004063 1.4e-09 66.6 110 39.1
Carub.0008s0262 Capsella rubella HOM05D003506 ORTHO05D004063 1.4e-09 66.6 95 41.1
Cpa.g.sc27.145 Carica papaya HOM05D003506 ORTHO05D004063 1.4e-09 66.6 102 39.2
Actinidia11835 Actinidia chinensis HOM05D003506 ORTHO05D004063 1.8e-09 66.2 100 37.0
A01p11060 Brassica napus HOM05D003506 ORTHO05D004063 1.8e-09 66.2 110 39.1
CSS0002170 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 1.8e-09 66.2 105 37.1
CiPaw.12G027300 Carya illinoinensis HOM05D003506 ORTHO05D004063 1.8e-09 66.2 109 39.4
Haze_19428 Corylus avellana HOM05D003506 ORTHO05D004063 1.8e-09 66.2 108 37.0
Potri.003G101000 Populus trichocarpa HOM05D003506 ORTHO05D004063 1.8e-09 66.2 106 39.6
Thecc.03G312300 Theobroma cacao HOM05D003506 ORTHO05D004063 2.4e-09 65.9 89 44.9
Ciclev10027583m.g Citrus clementina HOM05D003506 ORTHO05D004063 4.0e-09 65.1 110 37.3
Eucgr.E00383 Eucalyptus grandis HOM05D003506 ORTHO05D004063 4.0e-09 65.1 94 41.5
Gohir.A12G203900 Gossypium hirsutum HOM05D003506 ORTHO05D004063 6.9e-09 64.3 105 34.3
Gohir.D12G206300 Gossypium hirsutum HOM05D003506 ORTHO05D004063 6.9e-09 64.3 105 34.3
Gorai.008G221500 Gossypium raimondii HOM05D003506 ORTHO05D004063 6.9e-09 64.3 105 34.3
Lj1A1215T59 Lonicera japonica HOM05D003506 ORTHO05D004063 6.9e-09 64.3 81 43.2
PGR042G2755 Punica granatum HOM05D003506 ORTHO05D004063 6.9e-09 64.3 105 40.0
QL12p010090 Quercus lobata HOM05D003506 ORTHO05D004063 9.0e-09 63.9 105 36.2
AL8G13190 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.2e-08 63.5 106 36.8
CAN.G641.75 Capsicum annuum HOM05D003506 ORTHO05D004063 1.2e-08 63.5 105 36.2
Cpa.g.sc27.148 Carica papaya HOM05D003506 ORTHO05D004063 1.5e-08 63.2 96 38.5
Aqoxy1G04135 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 2.0e-08 62.8 105 35.2
AL8G13340 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 2.0e-08 62.8 105 38.1
Cc10_g11570 Coffea canephora HOM05D003506 ORTHO05D004063 2.0e-08 62.8 105 35.2
Thhalv10000742m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 2.0e-08 62.8 97 40.2
Haze_19427 Corylus avellana HOM05D003506 ORTHO05D004063 2.6e-08 62.4 105 37.1
Thhalv10024259m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 2.6e-08 62.4 106 36.8
PGR044G0363 Punica granatum HOM05D003506 ORTHO05D004063 2.6e-08 62.4 105 39.0
CAN.G641.64 Capsicum annuum HOM05D003506 ORTHO05D004063 3.4e-08 62.0 105 35.2
COL.COLO4_15511 Corchorus olitorius HOM05D003506 ORTHO05D004063 3.4e-08 62.0 105 37.1
Thhalv10024294m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 3.4e-08 62.0 106 38.7
Aqoxy4G00434 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 4.5e-08 61.6 94 39.4
Rhsim03G0013700 Rhododendron simsii HOM05D003506 ORTHO05D004063 4.5e-08 61.6 53 52.8
CAN.G261.9 Capsicum annuum HOM05D000101 ORTHO05D000089 5.8e-08 61.2 71 46.5
CiPaw.12G027500 Carya illinoinensis HOM05D003506 ORTHO05D004063 5.8e-08 61.2 106 35.8
RhsimUnG0207500 Rhododendron simsii HOM05D003506 ORTHO05D004063 5.8e-08 61.2 81 39.5
Aqoxy1G04134 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 7.6e-08 60.8 102 36.3
Cc02_g12230 Coffea canephora HOM05D003506 ORTHO05D004063 7.6e-08 60.8 105 36.2
CAN.G541.39 Capsicum annuum HOM05D003506 ORTHO05D004063 9.9e-08 60.5 98 37.8
CARHR176510 Cardamine hirsuta HOM05D003506 ORTHO05D004063 9.9e-08 60.5 106 34.9
RcHm_v2.0_Chr3g0479451 Rosa chinensis HOM05D003506 ORTHO05D004063 9.9e-08 60.5 87 40.2
THA.LOC109116396 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 9.9e-08 60.5 105 34.3
BcaC06g31546 Brassica carinata HOM05D003506 ORTHO05D004063 1.3e-07 60.1 97 38.1
THA.LOC104806185 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 1.3e-07 60.1 110 34.5
Aqoxy4G00428 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 1.7e-07 59.7 106 34.0
Gorai.004G181200 Gossypium raimondii HOM05D003506 ORTHO05D004063 1.7e-07 59.7 105 31.4
Nn7g37688 Nelumbo nucifera HOM05D003506 ORTHO05D004063 1.7e-07 59.7 106 37.7
Rhsim03G0012900 Rhododendron simsii HOM05D003506 ORTHO05D004063 1.7e-07 59.7 53 50.9
Rhsim03G0013500 Rhododendron simsii HOM05D003506 ORTHO05D004063 1.7e-07 59.7 53 50.9
CARHR176610 Cardamine hirsuta HOM05D003506 ORTHO05D004063 2.2e-07 59.3 106 35.8
Ah.06g181800 Amaranthus hybridus HOM05D003506 ORTHO05D004063 2.9e-07 58.9 87 41.4
Carub.0007s2209 Capsella rubella HOM05D003506 ORTHO05D004063 2.9e-07 58.9 106 39.6
CAN.G639.26 Capsicum annuum HOM05D000101 ORTHO05D000089 2.9e-07 58.9 69 43.5
Ciclev10033967m.g Citrus clementina HOM05D003506 ORTHO05D004063 2.9e-07 58.9 102 35.3
Cc00_g30260 Coffea canephora HOM05D003506 ORTHO05D004063 2.9e-07 58.9 105 32.4
Lj2C372T7 Lonicera japonica HOM05D003506 ORTHO05D004063 3.8e-07 58.5 80 38.8
AL7G35000 Arabidopsis lyrata HOM05D000432 ORTHO05D004063 6.4e-07 57.8 106 36.8
Rhsim03G0013200 Rhododendron simsii HOM05D003506 ORTHO05D004063 6.4e-07 57.8 53 49.1
CiPaw.12G027400 Carya illinoinensis HOM05D003506 ORTHO05D004063 8.4e-07 57.4 105 35.2
CAN.G1661.5 Capsicum annuum HOM05D000101 ORTHO05D000089 1.1e-06 57.0 69 43.5
CsaV3_5G004570 Cucumis sativus L. HOM05D003506 ORTHO05D004063 1.9e-06 56.2 105 34.3
TWI60G1006 Tripterygium wilfordii HOM05D003506 ORTHO05D004063 2.4e-06 55.8 103 34.0
Eucgr.L02387 Eucalyptus grandis HOM05D000101 ORTHO05D000089 3.2e-06 55.5 78 44.9
Gohir.D08G173500 Gossypium hirsutum HOM05D003506 ORTHO05D004063 3.2e-06 55.5 105 29.5
CAN.G9370.1 Capsicum annuum HOM05D000101 ORTHO05D000089 4.2e-06 55.1 64 45.3
Gohir.A08G152600 Gossypium hirsutum HOM05D003506 ORTHO05D004063 4.2e-06 55.1 96 30.2
Hma1.2p1_2475F.1_g322790 Hydrangea macrophylla HOM05D003506 ORTHO05D004063 4.2e-06 55.1 87 37.9
SGA_v2.0_scaffold69G23083 Striga asiatica HOM05D003506 ORTHO05D004063 4.2e-06 55.1 105 30.5
Actinidia26982 Actinidia chinensis HOM05D003506 ORTHO05D004063 5.5e-06 54.7 53 49.1
MELO3C005504.2 Cucumis melo HOM05D003506 ORTHO05D004063 5.5e-06 54.7 105 33.3
CAN.G1661.7 Capsicum annuum HOM05D000101 ORTHO05D000089 7.1e-06 54.3 70 42.9
Cfa001535 Carpinus fangiana HOM05D003506 ORTHO05D004063 7.1e-06 54.3 97 38.1
Eucgr.F03323 Eucalyptus grandis HOM05D000101 ORTHO05D000089 7.1e-06 54.3 69 47.8
Cfa020427 Carpinus fangiana HOM05D000101 ORTHO05D000089 9.3e-06 53.9 104 34.6
FvH4_6g22120 Fragaria vesca HOM05D003506 ORTHO05D004063 9.3e-06 53.9 87 36.8
FAN14G0755 Fragaria x ananassa HOM05D003506 ORTHO05D004063 9.3e-06 53.9 87 36.8


User provided reference genes

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