Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02490 Coffea canephora HOM05D000870 ORTHO05D153145 2.3e-57 225.3 110 100.0
Cc02_g08480 Coffea canephora HOM05D000870 ORTHO05D000715 3.8e-12 75.1 92 48.9
Actinidia34344 Actinidia chinensis HOM05D000870 ORTHO05D000715 3.9e-09 65.1 92 44.6
Duzib128G0225 Durio zibethinus HOM05D000870 ORTHO05D000715 3.9e-09 65.1 92 43.5
Ciclev10031759m.g Citrus clementina HOM05D000870 ORTHO05D000715 5.1e-09 64.7 92 44.6
Duzib106G1966 Durio zibethinus HOM05D000870 ORTHO05D000715 5.1e-09 64.7 92 43.5
Oeu023556.2 Olea europaea HOM05D000870 ORTHO05D000715 5.1e-09 64.7 90 44.4
Oeu025628.1 Olea europaea HOM05D000870 ORTHO05D000715 5.1e-09 64.7 90 44.4
Manes.10G037600 Manihot esculenta HOM05D000870 ORTHO05D000715 6.6e-09 64.3 92 43.5
Prupe.2G227500 Prunus persica HOM05D000870 ORTHO05D000715 6.6e-09 64.3 92 43.5
Aqoxy4G03049 Aquilegia oxysepala HOM05D000870 ORTHO05D000715 8.7e-09 63.9 92 42.4
Cpa.g.sc1.332 Carica papaya HOM05D000870 ORTHO05D000715 8.7e-09 63.9 92 43.5
COL.COLO4_10920 Corchorus olitorius HOM05D000870 ORTHO05D000715 8.7e-09 63.9 92 42.4
MD07G1190000 Malus domestica HOM05D000870 ORTHO05D000715 8.7e-09 63.9 92 43.5
Nn2g10502 Nelumbo nucifera HOM05D000870 ORTHO05D000715 8.7e-09 63.9 92 44.6
ATR0751G193 Amborella trichopoda HOM05D000870 ORTHO05D000715 1.5e-08 63.2 37 81.1
SHI22537 Sapria himalayana HOM05D000870 ORTHO05D000715 1.5e-08 63.2 96 41.7
arahy.Tifrunner.gnm1.ann1.HJ8JHV Arachis hypogaea HOM05D000870 ORTHO05D000715 1.9e-08 62.8 92 43.5
arahy.Tifrunner.gnm1.ann1.J9LUB0 Arachis hypogaea HOM05D000870 ORTHO05D000715 1.9e-08 62.8 92 43.5
Oeu033413.1 Olea europaea HOM05D000870 ORTHO05D000715 1.9e-08 62.8 128 34.4
Gohir.A10G211500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.5e-08 62.4 92 41.3
Gohir.D10G219700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.5e-08 62.4 92 41.3
Gorai.011G246400 Gossypium raimondii HOM05D000870 ORTHO05D000715 2.5e-08 62.4 92 41.3
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 2.5e-08 62.4 92 43.5
TAR633G0149 Trochodendron aralioides HOM05D000870 ORTHO05D000715 2.5e-08 62.4 92 42.4
arahy.Tifrunner.gnm1.ann1.F3QZDX Arachis hypogaea HOM05D000870 ORTHO05D000715 3.3e-08 62.0 92 42.4
THA.LOC104824256 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 3.3e-08 62.0 92 41.3
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 4.3e-08 61.6 92 42.4
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.3e-08 61.6 92 42.4
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.3e-08 61.6 92 42.4
Glyma.18G286100 Glycine max HOM05D000870 ORTHO05D000715 4.3e-08 61.6 92 43.5
Gohir.A05G299700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 4.3e-08 61.6 96 39.6
Gohir.D05G299500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 4.3e-08 61.6 92 41.3
Sed0008473 Sechium edule HOM05D000870 ORTHO05D000715 4.3e-08 61.6 92 42.4
CSS0018656 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 5.6e-08 61.2 91 42.9
Lalb_Chr04g0257941 Lupinus albus HOM05D000870 ORTHO05D000715 7.3e-08 60.8 92 42.4
MD01G1120600 Malus domestica HOM05D000870 ORTHO05D000715 7.3e-08 60.8 37 78.4
TWI15G0914 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 7.3e-08 60.8 96 40.6
Duzib114G0076 Durio zibethinus HOM05D000870 ORTHO05D000715 9.6e-08 60.5 92 41.3
Gorai.009G317000 Gossypium raimondii HOM05D000870 ORTHO05D000715 9.6e-08 60.5 92 40.2
Hma1.2p1_0402F.1_g145051 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 9.6e-08 60.5 100 38.0
Hma1.2p1_1483F.1_g286260 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 9.6e-08 60.5 100 38.0
Psat3g185840 Pisum sativum HOM05D000870 ORTHO05D000715 1.3e-07 60.1 92 40.2
Sc09g0007170 Simmondsia chinensis HOM05D000870 ORTHO05D000715 1.3e-07 60.1 92 41.3
TWI63G1221 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 1.3e-07 60.1 37 78.4
CiPaw.01G281900 Carya illinoinensis HOM05D000870 ORTHO05D000715 1.6e-07 59.7 92 41.3
Ca_07178_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 1.6e-07 59.7 92 42.4
Dinv31409 Davidia involucrata HOM05D000870 ORTHO05D000715 1.6e-07 59.7 100 39.0
vmacro07142 Vaccinium macrocarpon HOM05D000870 ORTHO05D000715 1.6e-07 59.7 92 40.2
AL4G36840 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 41.3
AT2G39450 Arabidopsis thaliana HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 41.3
Glyma.02G095400 Glycine max HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 42.4
Hma1.2p1_0207F.1_g087730 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 41.3
Lsat_1_v5_gn_9_66501 Lactuca sativa HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 42.4
Phvul.008G015500 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 41.3
TPR.G15509 Trifolium pratense HOM05D000870 ORTHO05D000715 2.1e-07 59.3 92 42.4
GSVIVG01016640001 Vitis vinifera HOM05D000870 ORTHO05D000715 2.1e-07 59.3 100 39.0
CAN.G1339.7 Capsicum annuum HOM05D000870 ORTHO05D000715 2.8e-07 58.9 92 41.3
Potri.008G049600 Populus trichocarpa HOM05D000870 ORTHO05D000715 2.8e-07 58.9 92 41.3
Sed0027298 Sechium edule HOM05D000870 ORTHO05D000715 2.8e-07 58.9 92 41.3
Solyc05g054730.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 2.8e-07 58.9 92 40.2
Sopen05g033200 Solanum pennellii HOM05D000870 ORTHO05D000715 2.8e-07 58.9 92 40.2
VMungo1383G0651 Vigna mungo HOM05D000870 ORTHO05D000715 2.8e-07 58.9 92 41.3
BcaC02g07403 Brassica carinata HOM05D000870 ORTHO05D000715 3.6e-07 58.5 90 41.1
A04p30450 Brassica napus HOM05D000870 ORTHO05D000715 3.6e-07 58.5 90 41.1
C04p67350 Brassica napus HOM05D000870 ORTHO05D000715 3.6e-07 58.5 90 41.1
BolC4t28230H Brassica oleracea HOM05D000870 ORTHO05D000715 3.6e-07 58.5 90 41.1
BraA04t18463Z Brassica rapa HOM05D000870 ORTHO05D000715 3.6e-07 58.5 90 41.1
Peaxi162Scf00015g02216 Petunia axillaris HOM05D000870 ORTHO05D000715 3.6e-07 58.5 92 41.3
PGSC0003DMG400023516 Solanum tuberosum HOM05D000870 ORTHO05D000715 3.6e-07 58.5 92 40.2
Lsat_1_v5_gn_8_17280 Lactuca sativa HOM05D000870 ORTHO05D000715 4.8e-07 58.2 92 43.5
Lj1g0016343 Lotus japonicus HOM05D000870 ORTHO05D000715 4.8e-07 58.2 92 40.2
Potri.010G211300 Populus trichocarpa HOM05D000870 ORTHO05D000715 4.8e-07 58.2 92 41.3
Thecc.10G057800 Theobroma cacao HOM05D000870 ORTHO05D000715 4.8e-07 58.2 92 40.2
BcaB06g29087 Brassica carinata HOM05D000870 ORTHO05D000715 6.2e-07 57.8 90 41.1
ECA232G3794 Erigeron canadensis HOM05D000870 ORTHO05D000715 6.2e-07 57.8 91 41.8
HanXRQChr09g0247671 Helianthus annuus HOM05D000870 ORTHO05D000715 6.2e-07 57.8 91 41.8
Nn2g12876 Nelumbo nucifera HOM05D000870 ORTHO05D000715 6.2e-07 57.8 91 41.8
QL08p057959 Quercus lobata HOM05D000870 ORTHO05D000715 6.2e-07 57.8 112 33.9
Atru.chr12.562 Acer truncatum HOM05D000870 ORTHO05D000715 8.1e-07 57.4 92 40.2
Actinidia02982 Actinidia chinensis HOM05D000870 ORTHO05D000715 8.1e-07 57.4 92 40.2
AL463U10030 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 8.1e-07 57.4 92 40.2
BcaB02g09118 Brassica carinata HOM05D000870 ORTHO05D000715 8.1e-07 57.4 90 41.1
A05p06940 Brassica napus HOM05D000870 ORTHO05D000715 8.1e-07 57.4 90 41.1
Carub.0004s2152 Capsella rubella HOM05D000870 ORTHO05D000715 8.1e-07 57.4 92 40.2
CARHR134320 Cardamine hirsuta HOM05D000870 ORTHO05D000715 1.1e-06 57.0 92 40.2
Eucgr.G02893 Eucalyptus grandis HOM05D000870 ORTHO05D000715 1.1e-06 57.0 92 41.3
Eucgr.J01168 Eucalyptus grandis HOM05D000870 ORTHO05D000715 1.1e-06 57.0 92 41.3
Thhalv10016762m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 1.1e-06 57.0 92 39.1
MBI05_g07851_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 1.1e-06 57.0 92 40.2
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 1.1e-06 57.0 37 70.3
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.1e-06 57.0 37 70.3
Psat6g190320 Pisum sativum HOM05D000870 ORTHO05D000715 1.1e-06 57.0 37 70.3
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 1.4e-06 56.6 92 40.2
Hund20002 Selenicereus undatus HOM05D000870 ORTHO05D000715 1.4e-06 56.6 92 39.1
Ah.16g107570 Amaranthus hybridus HOM05D000870 ORTHO05D000715 1.8e-06 56.2 92 39.1
BolC4t22430H Brassica oleracea HOM05D000870 ORTHO05D000715 1.8e-06 56.2 90 42.2
CANSAT54G0016 Cannabis sativa HOM05D000870 ORTHO05D000715 1.8e-06 56.2 92 40.2
AUR62035956 Chenopodium quinoa HOM05D000870 ORTHO05D000715 1.8e-06 56.2 92 39.1
Haze_16994 Corylus avellana HOM05D000870 ORTHO05D000715 2.4e-06 55.8 92 40.2
TAR636G0054 Trochodendron aralioides HOM05D000870 ORTHO05D000715 2.4e-06 55.8 92 42.4
Aa31LG5G20150 Aethionema arabicum HOM05D000870 ORTHO05D000715 3.1e-06 55.5 103 35.0
BcaC02g12075 Brassica carinata HOM05D000870 ORTHO05D000715 3.1e-06 55.5 37 73.0
AUR62022527 Chenopodium quinoa HOM05D000870 ORTHO05D000715 3.1e-06 55.5 92 39.1
Zm00001eb148620 Zea mays HOM05D000870 ORTHO05D000715 3.1e-06 55.5 92 39.1
MELO3C023828.2 Cucumis melo HOM05D000870 ORTHO05D000715 4.0e-06 55.1 92 38.0
Medtr7g022890 Medicago truncatula HOM05D000870 ORTHO05D000715 4.0e-06 55.1 92 40.2
HPP92_015404 Vanilla planifolia HOM05D000870 ORTHO05D000715 4.0e-06 55.1 92 39.1
HPP92_026993 Vanilla planifolia HOM05D000870 ORTHO05D000715 4.0e-06 55.1 92 39.1
Carub.0004s0709 Capsella rubella HOM05D000870 ORTHO05D000715 5.3e-06 54.7 92 41.3
CsaV3_5G006700 Cucumis sativus L. HOM05D000870 ORTHO05D000715 5.3e-06 54.7 92 37.0
DCAR_015229 Daucus carota HOM05D000870 ORTHO05D000715 5.3e-06 54.7 37 67.6
Os01g0837800 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 5.3e-06 54.7 92 39.1
PGR142G3727 Punica granatum HOM05D000870 ORTHO05D000715 5.3e-06 54.7 92 39.1
HPP92_019816 Vanilla planifolia HOM05D000870 ORTHO05D000715 5.3e-06 54.7 112 33.0
EL10Ac2g03459 Beta vulgaris HOM05D000870 ORTHO05D000715 9.0e-06 53.9 92 39.1


User provided reference genes

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