Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 3019.2 1526 100.0
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1493.0 1569 52.8
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1454.5 1584 50.5
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1452.6 1582 51.3
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1451.8 1609 50.6
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1448.0 1574 50.6
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1447.2 1598 50.3
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1446.8 1573 50.6
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1436.4 1596 50.0
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1434.1 1592 49.3
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1419.8 1573 50.3
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1418.3 1666 47.7
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1416.0 1590 48.5
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1407.5 1618 48.5
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1399.0 1719 46.5
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1399.0 1536 49.9
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1395.6 1239 57.9
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1392.5 1650 47.7
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1392.1 1532 50.7
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1389.8 1589 48.4
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1369.4 1583 49.5
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1365.9 1591 48.2
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1365.5 1623 46.8
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1362.1 1230 56.5
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1360.1 1539 49.1
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1350.1 1639 47.0
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1340.5 1627 46.6
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1338.9 1655 46.7
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1330.5 1667 45.9
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1325.8 1567 47.7
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1322.4 1640 45.6
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1321.2 1550 47.4
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1308.1 1550 48.3
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1307.7 1547 47.3
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1307.4 1601 46.8
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1302.3 1581 47.4
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1293.1 1525 47.7
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1290.4 1529 47.7
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1288.1 1525 47.6
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1285.0 1630 45.1
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1283.1 1525 47.1
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1277.3 1519 47.2
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1276.5 1585 46.1
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1273.1 1620 45.6
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1270.8 1614 46.3
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1269.6 1627 45.0
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1269.2 1585 45.4
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1268.8 1387 49.5
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1265.8 1612 45.6
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1263.1 1602 45.3
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1263.1 1539 46.8
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1262.7 1588 45.8
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1261.9 1577 47.2
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1261.1 1615 45.2
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1256.9 1573 46.0
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1250.7 1616 45.2
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1239.6 1618 45.3
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1224.5 1660 43.9
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1212.2 1561 45.1
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1208.7 1653 43.1
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1204.9 1362 49.0
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1204.1 1525 45.0
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1199.5 1371 48.4
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1196.0 1602 43.9
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 1192.2 1463 47.5
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1176.8 1591 43.8
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1174.1 1777 40.6
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1167.5 1615 43.3
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1161.7 1586 43.1
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1161.0 1547 44.1
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1158.7 1696 41.5
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1157.1 1501 44.8
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1155.6 1446 46.3
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1153.7 1521 44.5
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1153.3 1553 44.0
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1144.0 1465 44.4
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1142.1 1643 42.0
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 0.0e+00 1138.6 1512 44.9
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1134.8 1582 42.2
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1122.5 1539 43.7
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1116.7 1562 42.5
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1115.5 1520 43.9
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1085.9 1496 44.4
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1082.8 1647 40.4
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 7.9e-310 1067.8 1555 41.6
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 4.1e-306 1055.4 1481 42.5
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 6.1e-302 1041.6 1009 54.7
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 1.3e-299 1033.9 1554 40.4
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 1.7e-296 1023.5 1341 45.3
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 3.2e-295 1019.2 1334 45.5
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 1.4e-290 1003.8 1331 45.2
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 2.6e-289 999.6 1340 44.9
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 3.8e-280 969.1 1080 48.2
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.7e-256 890.6 1622 37.0
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 9.5e-255 884.8 1549 36.8
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.8e-245 854.0 959 47.7
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 4.5e-196 689.9 1590 32.5
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.6e-193 679.9 1014 41.0
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 1.5e-191 674.9 1487 33.3
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 1.6e-169 601.7 1716 30.5
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 9.1e-165 585.9 764 44.6
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 2.3e-160 571.2 816 41.7
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 3.2e-154 550.8 819 40.0
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.4e-144 518.8 901 36.6
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.5e-143 515.4 559 49.0
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.6e-140 505.4 1232 29.2
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 2.9e-139 501.1 1452 30.6
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 8.0e-137 493.0 821 38.0
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 8.0e-129 466.5 674 43.2
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 1.8e-128 465.3 712 42.0
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.9e-125 455.3 536 46.8
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 9.3e-109 399.8 546 43.4
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 4.9e-102 377.5 381 53.0
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.9e-94 351.7 490 42.0
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 7.4e-90 337.0 562 40.7
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 5.3e-88 330.9 295 58.6
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 2.8e-57 228.8 443 36.8
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 3.5e-55 221.9 407 35.9
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 8.5e-54 217.2 193 57.5
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 1.4e-48 199.9 900 25.3
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 2.9e-46 192.2 403 35.0
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 9.8e-42 177.2 123 68.3
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 8.8e-35 154.1 163 43.6
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 1.0e-30 140.6 160 48.1
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-30 139.8 225 41.3
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 2.9e-30 139.0 276 34.8
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 6.6e-30 137.9 134 50.7
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 4.2e-29 135.2 325 35.1
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 2.1e-28 132.9 97 66.0
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 8.0e-28 131.0 133 51.9
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.5e-26 124.4 134 46.3
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 7.5e-26 124.4 282 33.3
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 9.8e-26 124.0 122 50.0
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.3e-22 112.8 195 36.9
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.6e-22 111.3 195 37.9
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.5e-21 110.2 202 38.6
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.5e-21 110.2 204 34.8
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.3e-21 107.8 202 38.1
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.0e-19 104.0 182 36.8
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 3.7e-17 95.5 635 22.8
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 3.2e-16 92.4 160 37.5
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 5.4e-16 91.7 62 66.1
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.0e-16 91.3 150 41.3
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-15 90.5 150 41.3
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.0e-14 87.4 143 40.6
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-14 86.7 150 40.7
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.9e-14 85.5 150 40.0
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 5.6e-13 81.6 111 41.4
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 1.2e-12 80.5 73 54.8
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.6e-12 80.1 121 41.3
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 9.8e-10 70.9 135 40.0
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 8.3e-09 67.8 341 24.6


User provided reference genes

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