Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 1.0e-305 1052.7 592 100.0
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 3.7e-138 496.1 606 50.8
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 1.6e-133 480.7 610 50.0
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 5.7e-131 472.2 597 49.9
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.0e-124 451.4 600 48.8
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 1.0e-124 451.4 646 45.5
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 1.3e-119 434.5 656 44.8
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 6.5e-119 432.2 591 47.0
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 3.2e-118 429.9 591 46.7
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 2.7e-117 426.8 623 45.4
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 4.7e-117 426.0 643 44.0
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 5.7e-115 419.1 593 48.1
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 5.7e-115 419.1 597 46.2
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 2.2e-114 417.2 599 45.6
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 8.3e-114 415.2 654 43.0
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 4.1e-113 412.9 642 45.5
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.0e-111 408.3 605 44.1
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 2.5e-110 403.7 596 45.0
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 4.7e-109 399.4 640 44.7
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 1.4e-108 397.9 637 43.3
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 3.0e-108 396.7 591 47.2
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 1.2e-107 394.8 630 42.9
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 1.5e-107 394.4 535 48.0
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 3.7e-106 389.8 595 43.7
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 8.3e-106 388.7 661 40.5
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 5.4e-105 386.0 775 37.8
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 1.6e-104 384.4 665 40.6
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 2.7e-104 383.6 569 42.4
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.7e-104 383.6 665 40.8
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 3.8e-103 379.8 664 41.0
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 6.6e-103 379.0 586 42.7
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 2.8e-101 373.6 630 42.7
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 1.0e-100 371.7 591 43.8
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.8e-100 370.9 588 42.5
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 1.8e-100 370.9 589 43.3
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 8.9e-100 368.6 590 42.9
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 1.2e-99 368.2 501 48.1
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 1.5e-99 367.9 653 40.9
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 3.4e-99 366.7 651 41.5
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 4.4e-99 366.3 597 41.9
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 9.8e-99 365.2 593 42.7
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 2.2e-98 364.0 655 41.2
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 1.1e-97 361.7 677 39.7
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 1.8e-97 360.9 577 43.7
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 3.5e-96 356.7 600 42.3
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 1.3e-95 354.8 600 41.0
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 1.3e-95 354.8 611 40.8
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 5.0e-95 352.8 632 41.1
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.1e-94 351.7 600 41.3
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 1.2e-93 348.2 601 40.9
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 1.0e-92 345.1 625 40.0
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 2.2e-90 337.4 578 40.0
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 3.7e-90 336.7 578 40.0
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 8.3e-90 335.5 598 39.5
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 1.1e-89 335.1 596 39.6
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 1.4e-89 334.7 590 40.2
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 9.2e-89 332.0 621 39.5
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 6.0e-88 329.3 658 38.4
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 1.3e-87 328.2 577 39.7
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 2.3e-87 327.4 630 38.4
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 8.6e-87 325.5 605 38.0
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.9e-86 324.3 600 39.2
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 5.6e-86 322.8 601 39.6
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 6.8e-84 315.8 408 48.8
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 9.8e-83 312.0 497 44.5
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 1.7e-82 311.2 645 38.0
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 2.7e-80 303.9 642 38.3
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 3.0e-79 300.4 419 45.6
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 1.1e-76 292.0 579 38.2
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 1.4e-76 291.6 569 37.6
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.5e-75 288.1 393 46.6
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 7.6e-75 285.8 588 37.4
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 2.9e-74 283.9 580 36.2
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 9.2e-73 278.9 390 48.2
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 8.6e-71 272.3 555 36.6
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 2.5e-70 270.8 568 38.4
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 2.6e-67 260.8 655 33.1
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 2.2e-66 257.7 387 43.9
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 6.4e-66 256.1 267 58.1
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 8.4e-66 255.8 634 35.2
vmacro05229 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 4.2e-65 253.4 275 56.4
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 1.1e-60 238.8 385 40.8
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 9.0e-60 235.7 385 41.3
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.6e-59 234.2 452 39.6
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.0e-55 222.2 568 34.2
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 2.5e-54 217.6 415 41.4
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 8.7e-47 192.6 343 41.7
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 1.9e-46 191.4 577 31.0
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.6e-45 188.3 343 41.1
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 8.4e-42 176.0 425 36.5
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 8.4e-42 176.0 471 33.1
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.1e-41 175.6 347 38.9
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 3.9e-39 167.2 338 38.5
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 6.7e-39 166.4 378 34.1
Os09g0421200 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 4.1e-36 157.1 359 35.1
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 5.9e-35 153.3 344 37.2
Sabra13G0113100 Salix brachista HOM05D000009 ORTHO05D000008 2.5e-33 147.9 369 37.1
Dinv09475 Davidia involucrata HOM05D000240 ORTHO05D015017 1.3e-31 142.1 244 43.4
vmacro05230 Vaccinium macrocarpon HOM05D000240 ORTHO05D015017 5.0e-26 123.6 208 42.3
CSS0035154 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D015017 1.7e-21 108.6 107 59.8
Ciclev10005818m.g Citrus clementina HOM05D000240 ORTHO05D015017 2.0e-19 101.7 224 36.6
Hma1.2p1_0595F.1_g186120 Hydrangea macrophylla HOM05D000240 ORTHO05D015017 5.0e-18 97.1 169 45.6
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 1.1e-17 95.9 139 40.3
Psat7g032320 Pisum sativum HOM05D000240 ORTHO05D002608 7.2e-17 93.2 203 36.0
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 6.1e-16 90.1 190 37.9
Mapoly0060s0012 Marchantia polymorpha HOM05D000240 ORTHO05D002608 6.1e-16 90.1 598 23.4
VMungo0647G0327 Vigna mungo HOM05D000240 ORTHO05D015017 2.3e-15 88.2 233 35.6
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 1.7e-13 82.0 170 40.6
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 3.7e-13 80.9 133 44.4
BcaC07g42757 Brassica carinata HOM05D000240 ORTHO05D002608 4.8e-13 80.5 96 53.1
CDE05G3239 Ceratophyllum demersum HOM05D000240 ORTHO05D015017 8.2e-13 79.7 170 32.4
Lsat_1_v5_gn_7_4320 Lactuca sativa HOM05D000240 ORTHO05D015017 1.8e-12 78.6 152 40.8
COL.COLO4_07160 Corchorus olitorius HOM05D000240 ORTHO05D015017 2.4e-12 78.2 62 66.1
Os09g0421166 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D015017 3.5e-11 74.3 113 43.4
HPP92_026952 Vanilla planifolia HOM05D003358 ORTHO05D003864 3.5e-11 74.3 148 35.8
unitig_21.g20920 Utricularia gibba HOM05D000240 ORTHO05D002608 6.5e-10 70.1 222 32.9
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 2.7e-08 64.7 74 50.0
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 2.7e-08 64.7 74 50.0
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 6.7e-07 60.1 63 52.4
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 2.6e-06 58.2 63 50.8
Haze_02871 Corylus avellana HOM05D000108 ORTHO05D000014 4.4e-06 57.4 55 61.8


User provided reference genes

Program Settings