Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 1.9e-33 145.2 70 100.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 7.2e-09 63.5 37 81.1
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.7e-08 61.6 37 81.1
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 4.7e-08 60.8 66 56.1
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 4.7e-08 60.8 35 82.9
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 8.0e-08 60.1 36 83.3
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 8.0e-08 60.1 35 82.9
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 8.0e-08 60.1 35 82.9
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.0e-07 59.7 33 84.8
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.0e-07 59.7 35 85.7
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.8e-07 58.9 35 82.9
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 2.3e-07 58.5 35 80.0
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.3e-07 58.5 35 77.1
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 2.3e-07 58.5 35 82.9
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 3.0e-07 58.2 35 82.9
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.0e-07 58.2 38 73.7
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 3.0e-07 58.2 37 73.0
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.0e-07 58.2 37 75.7
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.0e-07 58.2 37 75.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 4.0e-07 57.8 38 73.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 5.2e-07 57.4 35 80.0
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 5.2e-07 57.4 35 80.0
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 5.2e-07 57.4 35 80.0
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 6.7e-07 57.0 33 84.8
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 8.8e-07 56.6 35 80.0
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 8.8e-07 56.6 35 80.0
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 8.8e-07 56.6 33 81.8
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 8.8e-07 56.6 36 77.8
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 8.8e-07 56.6 36 77.8
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 8.8e-07 56.6 33 84.8
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 8.8e-07 56.6 37 78.4
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.2e-06 56.2 37 70.3
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.2e-06 56.2 37 73.0
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.2e-06 56.2 36 77.8
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.5e-06 55.8 33 84.8
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.5e-06 55.8 37 73.0
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.5e-06 55.8 36 75.0
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.5e-06 55.8 32 81.2
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.5e-06 55.8 35 77.1
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 2.0e-06 55.5 35 77.1
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.0e-06 55.5 34 76.5
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 2.0e-06 55.5 32 87.5
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 2.6e-06 55.1 35 74.3
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.6e-06 55.1 37 75.7
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 2.6e-06 55.1 36 75.0
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 3.3e-06 54.7 33 78.8
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 3.3e-06 54.7 36 75.0
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 4.4e-06 54.3 36 72.2
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 4.4e-06 54.3 33 78.8
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 4.4e-06 54.3 36 72.2
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 5.7e-06 53.9 35 77.1
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.5e-06 53.5 34 76.5
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 7.5e-06 53.5 35 71.4
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 7.5e-06 53.5 35 74.3
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 7.5e-06 53.5 36 72.2
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 7.5e-06 53.5 35 74.3
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 9.7e-06 53.1 33 78.8
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 9.7e-06 53.1 37 70.3
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 9.7e-06 53.1 35 74.3
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 9.7e-06 53.1 35 74.3
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 9.7e-06 53.1 36 72.2
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 9.7e-06 53.1 36 75.0


User provided reference genes

Program Settings