Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 6.0e-159 564.3 323 100.0
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 5.2e-70 268.9 304 56.6
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 8.9e-70 268.1 308 50.0
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.3e-68 264.2 299 58.9
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 4.9e-68 262.3 308 45.8
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 1.1e-64 251.1 300 52.3
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 3.3e-64 249.6 286 46.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.0e-62 242.7 287 57.1
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 5.2e-62 242.3 324 49.7
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 6.8e-62 241.9 325 47.1
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 5.4e-59 232.3 322 52.8
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 4.6e-58 229.2 322 52.8
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 1.3e-57 227.6 320 54.4
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 1.6e-55 220.7 300 41.3
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 1.4e-54 217.6 294 55.1
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 5.2e-54 215.7 288 56.2
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 8.9e-54 214.9 286 53.5
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 8.9e-54 214.9 288 56.2
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 2.6e-53 213.4 324 45.4
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 2.9e-52 209.9 302 52.0
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 3.8e-52 209.5 322 49.4
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 4.9e-52 209.1 295 52.9
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 4.9e-52 209.1 295 52.9
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 8.4e-52 208.4 281 54.1
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 8.4e-52 208.4 281 54.1
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.1e-51 208.0 284 48.2
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 7.1e-51 205.3 288 48.6
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 2.1e-50 203.8 298 51.7
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 2.7e-50 203.4 277 56.7
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 1.7e-49 200.7 285 53.0
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 1.7e-49 200.7 287 38.7
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 6.6e-49 198.7 319 49.8
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 2.5e-48 196.8 282 47.9
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 4.3e-48 196.1 285 54.4
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 4.3e-48 196.1 288 53.1
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 4.3e-48 196.1 325 51.7
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 6.2e-47 192.2 288 52.1
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 2.4e-46 190.3 310 39.7
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 1.5e-45 187.6 289 35.6
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 3.4e-45 186.4 302 50.3
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 7.6e-45 185.3 291 48.1
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 2.2e-44 183.7 317 49.2
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 8.4e-44 181.8 289 39.4
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 1.1e-43 181.4 190 64.7
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 1.1e-43 181.4 325 46.2
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 4.6e-42 176.0 294 33.7
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 1.0e-41 174.9 287 49.1
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 3.9e-41 172.9 296 45.6
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 8.7e-41 171.8 278 36.0
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 5.6e-40 169.1 289 45.0
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 2.8e-39 166.8 328 45.1
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 6.2e-39 165.6 288 49.7
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 8.1e-39 165.2 295 44.7
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 1.1e-38 164.9 328 44.8
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 1.8e-38 164.1 288 48.3
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 5.3e-38 162.5 297 44.4
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 2.6e-37 160.2 288 47.9
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 4.5e-37 159.5 319 45.5
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 4.5e-37 159.5 287 48.1
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 7.6e-37 158.7 283 37.5
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 7.6e-37 158.7 298 49.0
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 2.2e-36 157.1 317 45.7
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 4.9e-36 156.0 290 47.2
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 7.1e-35 152.1 299 48.5
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 9.3e-35 151.8 310 47.1
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 4.6e-34 149.4 285 47.0
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 8.7e-33 145.2 298 45.0
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 1.1e-32 144.8 289 44.6
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 5.6e-32 142.5 298 45.0
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 7.4e-32 142.1 298 45.0
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 7.4e-32 142.1 288 45.5
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 9.6e-32 141.7 289 47.1
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 8.1e-31 138.7 288 45.1
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 2.6e-29 133.7 289 40.5
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 4.5e-29 132.9 288 44.1
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 7.6e-29 132.1 284 45.4
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.3e-28 131.3 189 56.6
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 1.4e-27 127.9 287 43.6
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 3.0e-25 120.2 144 47.2
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 5.1e-25 119.4 135 49.6
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 6.2e-23 112.5 176 36.4
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 4.0e-22 109.8 165 34.5
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 1.0e-20 105.1 283 41.7
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 6.5e-20 102.4 145 38.6
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 3.2e-19 100.1 284 38.4
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 3.5e-18 96.7 177 55.4
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 6.3e-15 85.9 135 34.1
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.4e-14 84.7 93 46.2
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.0e-09 68.6 108 39.8


User provided reference genes

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