Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 4.1e-38 161.0 87 100.0
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-14 83.2 84 57.1
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-14 83.2 84 56.0
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.4e-14 82.0 84 56.0
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.2e-13 79.7 87 58.6
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.6e-13 77.8 81 55.6
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.7e-12 75.9 85 54.1
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 2.3e-12 75.5 86 51.2
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.1e-12 74.3 82 52.4
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 6.6e-12 73.9 85 51.8
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 6.6e-12 73.9 82 54.9
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 6.6e-12 73.9 82 54.9
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.5e-11 72.8 85 52.9
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 7.3e-11 70.5 81 53.1
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 9.6e-11 70.1 108 44.4
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 9.6e-11 70.1 85 49.4
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 1.3e-10 69.7 87 48.3
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.6e-10 69.3 81 51.9
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.8e-10 68.6 84 46.4
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 3.6e-10 68.2 85 45.9
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 4.8e-10 67.8 64 64.1
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 4.8e-10 67.8 85 44.7
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 6.2e-10 67.4 64 64.1
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 6.2e-10 67.4 99 50.5
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 6.2e-10 67.4 84 47.6
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 8.1e-10 67.0 83 51.8
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 8.1e-10 67.0 88 47.7
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.4e-09 66.2 84 47.6
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.4e-09 66.2 83 48.2
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.4e-09 66.2 85 47.1
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.4e-09 66.2 85 43.5
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 3.1e-09 65.1 45 71.1
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.1e-09 65.1 70 55.7
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 4.0e-09 64.7 81 45.7
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.0e-09 64.7 82 50.0
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 5.3e-09 64.3 85 45.9
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 5.3e-09 64.3 75 56.0
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 5.3e-09 64.3 70 50.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 5.3e-09 64.3 84 47.6
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.3e-09 64.3 44 70.5
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 9.0e-09 63.5 91 48.4
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.5e-08 62.8 73 54.8
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 2.0e-08 62.4 71 52.1
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.0e-08 62.4 64 56.2
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 2.0e-08 62.4 84 46.4
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 2.6e-08 62.0 82 46.3
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.6e-08 62.0 87 40.2
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 3.4e-08 61.6 83 47.0
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.4e-08 61.6 98 42.9
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 5.8e-08 60.8 79 44.3
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 5.8e-08 60.8 45 68.9
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 5.8e-08 60.8 96 39.6
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 7.6e-08 60.5 69 47.8
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 7.6e-08 60.5 69 47.8
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 7.6e-08 60.5 69 47.8
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 9.9e-08 60.1 45 64.4
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 9.9e-08 60.1 51 60.8
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 9.9e-08 60.1 63 55.6
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 9.9e-08 60.1 90 42.2
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.3e-07 59.7 70 48.6
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 1.3e-07 59.7 87 43.7
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.3e-07 59.7 89 44.9
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 1.7e-07 59.3 71 46.5
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.2e-07 58.9 70 48.6
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 2.2e-07 58.9 44 65.9
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 2.2e-07 58.9 81 45.7
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.2e-07 58.9 70 52.9
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 2.9e-07 58.5 67 46.3
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 2.9e-07 58.5 88 45.5
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 2.9e-07 58.5 82 43.9
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 3.8e-07 58.2 71 45.1
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.8e-07 58.2 71 45.1
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.8e-07 58.2 71 45.1
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 3.8e-07 58.2 73 46.6
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 3.8e-07 58.2 83 43.4
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 4.9e-07 57.8 39 69.2
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 4.9e-07 57.8 74 47.3
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 6.4e-07 57.4 74 50.0
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 6.4e-07 57.4 70 47.1
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 8.4e-07 57.0 71 45.1
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 8.4e-07 57.0 45 62.2
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 8.4e-07 57.0 86 43.0
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.1e-06 56.6 91 42.9
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.4e-06 56.2 45 60.0
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.9e-06 55.8 39 64.1
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.9e-06 55.8 90 41.1
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.9e-06 55.8 90 41.1
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.4e-06 55.5 90 41.1
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 3.2e-06 55.1 38 68.4
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 3.2e-06 55.1 57 56.1
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 4.2e-06 54.7 40 62.5
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 7.1e-06 53.9 85 43.5


User provided reference genes

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