Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 6.5e-69 263.8 126 100.0
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 5.4e-23 111.3 103 55.3
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 3.9e-21 105.1 135 43.0
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 3.3e-20 102.1 100 55.0
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 5.6e-20 101.3 98 54.1
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 2.1e-19 99.4 114 48.2
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 2.1e-19 99.4 111 48.6
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 2.8e-19 99.0 129 46.5
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 6.2e-19 97.8 127 44.1
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 8.1e-19 97.4 129 44.2
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.4e-18 96.7 100 49.0
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 1.8e-18 96.3 107 51.4
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 4.0e-18 95.1 100 49.0
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 9.0e-18 94.0 99 52.5
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 9.0e-18 94.0 116 44.8
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 2.6e-17 92.4 100 49.0
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 2.6e-17 92.4 99 50.5
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 7.6e-17 90.9 98 50.0
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 3.8e-16 88.6 101 48.5
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 3.8e-16 88.6 103 47.6
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 3.8e-16 88.6 130 40.8
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 3.8e-16 88.6 100 50.0
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 4.9e-16 88.2 70 57.1
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 4.9e-16 88.2 135 40.0
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 4.9e-16 88.2 120 45.0
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 8.4e-16 87.4 99 47.5
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.1e-15 87.0 100 47.0
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 1.1e-15 87.0 102 49.0
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 1.4e-15 86.7 100 49.0
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 1.9e-15 86.3 100 44.0
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.9e-15 86.3 98 45.9
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 3.2e-15 85.5 100 46.0
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 3.2e-15 85.5 100 46.0
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 3.2e-15 85.5 100 46.0
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 3.2e-15 85.5 98 44.9
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 7.1e-15 84.3 100 47.0
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 7.1e-15 84.3 95 48.4
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 7.1e-15 84.3 110 46.4
Medtr5g068870 Medicago truncatula HOM05D008729 ORTHO05D006541 1.2e-14 83.6 78 53.8
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 1.2e-14 83.6 68 55.9
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 1.6e-14 83.2 98 42.9
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 2.7e-14 82.4 98 44.9
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 3.5e-14 82.0 48 68.8
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 4.6e-14 81.6 99 46.5
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 6.0e-14 81.3 101 43.6
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 6.0e-14 81.3 103 45.6
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 6.0e-14 81.3 101 45.5
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.0e-13 80.5 100 42.0
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 1.0e-13 80.5 102 49.0
TPR.G32534 Trifolium pratense HOM05D008729 ORTHO05D006541 1.0e-13 80.5 111 45.0
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.0e-13 80.5 100 43.0
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 2.3e-13 79.3 100 44.0
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 2.3e-13 79.3 105 43.8
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 2.3e-13 79.3 114 43.9
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 2.3e-13 79.3 101 41.6
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 2.3e-13 79.3 100 43.0
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 5.1e-13 78.2 100 42.0
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 8.7e-13 77.4 87 44.8
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.1e-12 77.0 97 44.3
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 1.5e-12 76.6 103 43.7
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 1.5e-12 76.6 100 41.0
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 3.3e-12 75.5 121 37.2
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 3.3e-12 75.5 103 41.7
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 3.3e-12 75.5 100 43.0
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 4.3e-12 75.1 102 45.1
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 7.4e-12 74.3 49 65.3
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 9.6e-12 73.9 101 42.6
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 9.6e-12 73.9 125 36.8
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 1.6e-11 73.2 105 41.9
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 8.1e-11 70.9 48 62.5
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 1.8e-10 69.7 118 38.1
Medtr5g008380 Medicago truncatula HOM05D008729 ORTHO05D006541 4.0e-10 68.6 111 41.4
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 5.3e-10 68.2 117 36.8
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 6.9e-10 67.8 116 36.2
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 6.9e-10 67.8 140 32.9
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.6e-09 65.9 119 34.5
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 3.4e-09 65.5 98 37.8
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 3.4e-09 65.5 90 41.1
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 5.8e-09 64.7 118 33.9
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 1.3e-08 63.5 40 65.0
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 1.7e-08 63.2 92 39.1
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 2.9e-08 62.4 40 62.5
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 3.8e-08 62.0 100 36.0
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 8.4e-08 60.8 48 56.2
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 1.1e-07 60.5 119 32.8
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 1.4e-07 60.1 103 38.8
unitig_21.g20743 Utricularia gibba HOM05D050672 ORTHO05D006541 5.5e-07 58.2 39 59.0
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 7.1e-07 57.8 102 34.3
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 9.3e-07 57.4 100 30.0
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 2.1e-06 56.2 100 29.0
Thecc.05G261900 Theobroma cacao HOM05D000052 ORTHO05D000046 2.1e-06 56.2 96 37.5
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 2.7e-06 55.8 102 29.4
CAN.G184.75 Capsicum annuum HOM05D001868 ORTHO05D009153 6.0e-06 54.7 82 41.5


User provided reference genes

Program Settings