Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 4.1e-196 688.0 367 100.0
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.5e-28 131.3 336 34.5
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.6e-27 126.7 325 31.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.1e-26 125.2 344 31.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.9e-26 122.5 359 32.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 9.0e-26 122.1 347 32.9
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 3.4e-25 120.2 328 33.5
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 5.8e-25 119.4 331 30.5
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.4e-23 114.8 341 32.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.4e-23 114.8 329 30.7
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 7.1e-23 112.5 335 31.0
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.6e-22 111.3 332 30.4
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.3e-21 108.2 326 32.5
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 1.7e-21 107.8 323 33.1
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.7e-21 107.8 331 28.7
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.3e-21 107.5 326 33.1
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 6.6e-21 105.9 326 32.8
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 6.6e-21 105.9 374 29.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 6.6e-21 105.9 327 31.5
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 6.6e-21 105.9 323 32.8
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 8.7e-21 105.5 322 32.6
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 8.7e-21 105.5 344 30.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.5e-20 104.0 341 27.3
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.5e-20 104.0 365 29.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 4.3e-20 103.2 317 29.3
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 9.6e-20 102.1 369 27.9
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 4.8e-19 99.8 319 30.1
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 9.0e-18 95.5 334 29.6
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.2e-17 95.1 338 28.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.6e-17 94.0 365 31.0
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.6e-17 94.0 119 43.7
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 9.9e-17 92.0 150 36.7
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.3e-16 91.7 97 51.5
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.3e-16 91.7 323 28.2
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 4.9e-16 89.7 358 29.1
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 8.4e-16 89.0 368 28.3
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 8.4e-16 89.0 316 28.8
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.4e-15 88.2 320 29.4
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 1.9e-15 87.8 306 28.4
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.9e-15 87.8 108 43.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.4e-15 87.4 437 27.2
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.2e-15 87.0 356 30.1
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 2.1e-14 84.3 312 28.5
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 2.1e-14 84.3 331 27.5
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 2.7e-14 84.0 343 27.4
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 4.6e-14 83.2 108 43.5
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 5.1e-13 79.7 213 35.7
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 6.7e-13 79.3 135 39.3
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 8.7e-13 79.0 329 29.2
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.5e-12 78.2 105 39.0
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 1.9e-12 77.8 408 25.2
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.9e-12 77.8 105 35.2
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 3.3e-12 77.0 386 25.6
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 5.6e-12 76.3 371 27.0
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 7.4e-12 75.9 119 36.1
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 9.6e-12 75.5 140 35.0
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 9.6e-12 75.5 320 27.8
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.3e-11 75.1 289 30.8
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 1.3e-11 75.1 87 47.1
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 2.1e-11 74.3 408 25.0
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 2.1e-11 74.3 161 33.5
FvH4_5g27110 Fragaria vesca HOM05D015681 ORTHO05D003476 2.8e-11 73.9 369 26.0
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 2.8e-11 73.9 307 25.7
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.8e-11 73.2 326 26.1
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.4e-10 71.6 73 49.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-10 71.6 73 50.7
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.4e-10 71.6 76 46.1
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.8e-10 71.2 107 40.2
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 3.1e-10 70.5 79 46.8
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 3.1e-10 70.5 73 47.9
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.1e-10 70.5 76 47.4
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 4.0e-10 70.1 149 30.9
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 4.0e-10 70.1 140 35.7
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 5.3e-10 69.7 73 49.3
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 6.9e-10 69.3 92 39.1
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.9e-10 69.3 76 46.1
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 6.9e-10 69.3 122 36.1
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 6.9e-10 69.3 73 46.6
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 6.9e-10 69.3 82 42.7
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 6.9e-10 69.3 82 42.7
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 9.0e-10 68.9 99 38.4
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 9.0e-10 68.9 73 47.9
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 9.0e-10 68.9 78 43.6
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 9.0e-10 68.9 73 46.6
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 9.0e-10 68.9 73 46.6
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 9.0e-10 68.9 113 31.9
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.2e-09 68.6 76 46.1
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.2e-09 68.6 88 45.5
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 1.2e-09 68.6 76 44.7
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.2e-09 68.6 71 47.9
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.5e-09 68.2 76 46.1
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 1.5e-09 68.2 325 28.9
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.5e-09 68.2 73 45.2
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 1.5e-09 68.2 318 28.0
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 1.5e-09 68.2 51 54.9
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.5e-09 68.2 161 29.8
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.0e-09 67.8 166 32.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.0e-09 67.8 92 43.5
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 2.0e-09 67.8 94 40.4
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 2.0e-09 67.8 92 42.4
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.0e-09 67.8 73 46.6
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 2.0e-09 67.8 75 44.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.0e-09 67.8 73 47.9
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.6e-09 67.4 103 35.0
Haze_18401 Corylus avellana HOM05D008057 ORTHO05D003476 2.6e-09 67.4 168 29.8
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 2.6e-09 67.4 73 46.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 2.6e-09 67.4 79 46.8
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.4e-09 67.0 76 43.4
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 3.4e-09 67.0 73 46.6
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 3.4e-09 67.0 73 46.6
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 3.4e-09 67.0 71 46.5
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.4e-09 67.0 73 46.6
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 3.4e-09 67.0 73 46.6
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.4e-09 67.0 93 37.6
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 4.5e-09 66.6 98 40.8
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 4.5e-09 66.6 110 30.9
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 5.8e-09 66.2 172 30.2
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.8e-09 66.2 76 43.4
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 5.8e-09 66.2 73 49.3
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 5.8e-09 66.2 318 28.6
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 5.8e-09 66.2 171 29.2
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 5.8e-09 66.2 307 27.4
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 7.6e-09 65.9 73 46.6
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 7.6e-09 65.9 63 50.8
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 7.6e-09 65.9 191 26.2
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 7.6e-09 65.9 71 47.9
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.9e-09 65.5 98 36.7
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.9e-09 65.5 98 36.7
FAN04G2538 Fragaria x ananassa HOM05D015681 ORTHO05D003476 9.9e-09 65.5 358 26.0
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 1.3e-08 65.1 286 28.0
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.7e-08 64.7 68 45.6
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.7e-08 64.7 76 42.1
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.7e-08 64.7 71 45.1
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 1.7e-08 64.7 108 38.0
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 2.2e-08 64.3 144 31.2
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.2e-08 64.3 342 24.9
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 2.9e-08 63.9 347 25.9
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.9e-08 63.9 73 41.1
FAN18G3766 Fragaria x ananassa HOM05D015681 ORTHO05D003476 2.9e-08 63.9 367 25.3
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.9e-08 63.9 71 47.9
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.9e-08 63.9 63 49.2
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.9e-08 63.9 66 47.0
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.9e-08 63.9 63 49.2
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 3.8e-08 63.5 73 42.5
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 4.9e-08 63.2 73 43.8
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.9e-08 63.2 73 43.8
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.9e-08 63.2 73 42.5
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.9e-08 63.2 73 42.5
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 4.9e-08 63.2 73 42.5
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 4.9e-08 63.2 312 24.0
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 4.9e-08 63.2 144 32.6
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 4.9e-08 63.2 190 31.6
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 6.4e-08 62.8 76 39.5
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 6.4e-08 62.8 68 42.6
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 6.4e-08 62.8 76 39.5
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 6.4e-08 62.8 66 48.5
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 8.4e-08 62.4 73 43.8
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 8.4e-08 62.4 94 39.4
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.1e-07 62.0 68 42.6
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.1e-07 62.0 73 43.8
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.1e-07 62.0 68 42.6
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.1e-07 62.0 66 43.9
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.1e-07 62.0 73 42.5
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.1e-07 62.0 68 42.6
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.4e-07 61.6 91 41.8
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.9e-07 61.2 73 39.7
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.9e-07 61.2 194 25.8
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 2.4e-07 60.8 68 41.2
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.4e-07 60.8 76 42.1
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 2.4e-07 60.8 66 43.9
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 2.4e-07 60.8 66 42.4
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 2.4e-07 60.8 78 43.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.2e-07 60.5 63 41.3
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 3.2e-07 60.5 73 39.7
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 3.2e-07 60.5 89 34.8
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 5.5e-07 59.7 68 41.2
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 5.5e-07 59.7 68 41.2
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.5e-07 59.7 277 27.1
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 7.1e-07 59.3 73 39.7
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 9.3e-07 58.9 281 25.3
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.1e-06 57.8 180 26.1
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 2.7e-06 57.4 370 26.8
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 3.5e-06 57.0 176 24.4
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 3.5e-06 57.0 265 26.4


User provided reference genes

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