Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 2.8e-139 498.8 292 100.0
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 4.6e-57 225.7 296 47.0
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 5.1e-56 222.2 330 47.6
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 4.3e-55 219.2 292 49.3
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 7.3e-55 218.4 305 46.9
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 1.7e-51 207.2 302 47.7
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 2.9e-51 206.5 311 51.4
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 2.4e-50 203.4 302 46.4
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 7.1e-50 201.8 298 45.0
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 1.2e-49 201.1 294 46.3
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 2.1e-49 200.3 293 45.4
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 4.6e-49 199.1 299 46.8
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 6.0e-49 198.7 282 45.4
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 3.3e-47 193.0 315 43.5
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 5.6e-47 192.2 299 46.2
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 5.6e-47 192.2 299 46.5
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 7.3e-47 191.8 337 41.2
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 7.3e-47 191.8 318 44.3
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 1.2e-46 191.0 288 53.8
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.1e-45 188.0 295 43.7
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 3.1e-45 186.4 313 47.6
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 6.4e-43 178.7 301 43.9
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 2.4e-42 176.8 296 49.3
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 2.4e-42 176.8 321 42.1
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 4.6e-41 172.6 299 48.5
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 4.6e-41 172.6 330 43.3
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 7.8e-41 171.8 292 42.5
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 1.0e-40 171.4 308 41.6
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.7e-40 170.6 298 43.3
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 8.7e-40 168.3 293 41.3
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 8.7e-40 168.3 309 42.4
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.1e-39 167.9 294 42.2
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 4.3e-39 166.0 303 40.6
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.6e-38 164.1 296 48.0
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 2.1e-38 163.7 288 39.9
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 8.1e-38 161.8 296 41.2
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 1.1e-37 161.4 293 39.2
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 9.0e-37 158.3 296 41.2
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.5e-36 156.0 297 45.1
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 5.8e-36 155.6 293 39.9
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 1.3e-35 154.5 287 47.7
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.7e-35 154.1 286 47.9
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 4.9e-35 152.5 297 43.4
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 1.1e-34 151.4 303 43.6
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 4.2e-34 149.4 286 40.6
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 7.1e-34 148.7 285 40.0
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 9.3e-34 148.3 288 39.9
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 2.1e-33 147.1 290 39.7
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 3.5e-33 146.4 304 37.8
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 3.0e-32 143.3 296 38.2
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 3.0e-32 143.3 296 38.2
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 5.1e-32 142.5 296 39.9
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 8.7e-32 141.7 288 38.2
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 8.7e-32 141.7 303 48.2
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 2.5e-31 140.2 302 38.4
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 1.6e-30 137.5 278 42.4
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.8e-30 136.0 291 37.5
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 1.1e-29 134.8 287 39.7
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 4.0e-29 132.9 327 35.8
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 8.4e-27 125.2 321 37.4
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 8.4e-27 125.2 282 36.5
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 1.4e-26 124.4 304 34.2
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 4.2e-26 122.9 298 36.2
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 4.2e-26 122.9 290 39.3
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 7.1e-26 122.1 301 34.2
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 2.7e-25 120.2 288 33.7
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 6.7e-24 115.5 287 36.9
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 3.3e-23 113.2 298 39.9
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 4.3e-23 112.8 315 33.3
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 9.6e-23 111.7 305 33.8
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 1.1e-21 108.2 291 39.5
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 3.1e-21 106.7 278 32.7
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 9.0e-21 105.1 310 33.2
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 1.2e-20 104.8 307 32.9
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 2.0e-20 104.0 311 33.4
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 4.5e-20 102.8 72 69.4
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 5.8e-20 102.4 305 33.4
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 5.8e-20 102.4 318 32.1
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 1.0e-19 101.7 298 31.5
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 1.0e-19 101.7 298 31.5
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 1.0e-19 101.7 315 34.3
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 1.3e-19 101.3 298 31.2
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 2.9e-19 100.1 296 31.8
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 2.9e-19 100.1 322 32.9
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 8.4e-19 98.6 294 32.7
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 1.4e-18 97.8 371 36.9
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 3.2e-18 96.7 267 31.8
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 5.5e-18 95.9 105 46.7
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 9.3e-18 95.1 164 43.3
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.3e-16 91.3 99 48.5
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 1.8e-16 90.9 331 29.9
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 7.4e-15 85.5 269 33.5
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 7.4e-15 85.5 68 60.3
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 7.4e-15 85.5 291 32.6
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 9.7e-15 85.1 98 46.9
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 1.3e-14 84.7 97 47.4
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 2.8e-14 83.6 230 31.7
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 2.8e-14 83.6 98 46.9
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 5.3e-13 79.3 98 42.9
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 5.3e-13 79.3 97 42.3
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 1.2e-12 78.2 294 32.3
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 3.4e-12 76.6 88 46.6
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 4.5e-12 76.3 66 56.1
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 1.3e-11 74.7 91 41.8
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 1.7e-11 74.3 274 31.0
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.7e-11 74.3 68 57.4
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 2.9e-11 73.6 94 42.6
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 8.5e-11 72.0 204 32.4
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 1.9e-10 70.9 96 42.7
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 2.5e-10 70.5 92 40.2
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 2.5e-10 70.5 306 30.4
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 2.5e-10 70.5 94 41.5
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 3.2e-10 70.1 89 42.7
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 4.2e-10 69.7 96 41.7
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 4.2e-10 69.7 95 41.1
SalBow2G1093 Salvia bowleyana HOM05D005197 ORTHO05D006263 5.5e-10 69.3 54 59.3
SalBow6G4547 Salvia bowleyana HOM05D005197 ORTHO05D006263 7.2e-10 68.9 49 59.2
SalBow2G3639 Salvia bowleyana HOM05D002402 ORTHO05D002633 1.2e-09 68.2 147 36.1
SalBow7G0563 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.6e-09 67.8 54 57.4
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 2.1e-09 67.4 291 31.6
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 4.6e-09 66.2 49 67.3
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 7.9e-09 65.5 242 31.0
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 1.0e-08 65.1 60 58.3
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 1.0e-08 65.1 60 58.3
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 1.0e-08 65.1 81 43.2
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 3.0e-08 63.5 60 56.7
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 3.0e-08 63.5 60 56.7
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 3.0e-08 63.5 100 45.0
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 3.0e-08 63.5 127 36.2
Carub.0001s2286 Capsella rubella HOM05D005197 ORTHO05D006263 6.7e-08 62.4 98 42.9
VMungo0464G0602 Vigna mungo HOM05D005197 ORTHO05D006263 6.7e-08 62.4 206 28.6
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 1.1e-07 61.6 83 39.8
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 1.9e-07 60.8 113 40.7
SGA_v2.0_scaffold447G51756 Striga asiatica HOM05D005197 ORTHO05D006263 4.3e-07 59.7 53 54.7
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 5.7e-07 59.3 100 41.0
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 7.4e-07 58.9 61 45.9
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 3.7e-06 56.6 134 36.6
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 3.7e-06 56.6 90 37.8
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 3.7e-06 56.6 90 37.8
SalBow5G1394 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.8e-06 56.2 100 40.0


User provided reference genes

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