Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01050 Coffea canephora HOM05D000345 ORTHO05D000215 2.6e-98 362.5 247 100.0
SalBow8G5017 Salvia bowleyana HOM05D000345 ORTHO05D000215 1.9e-24 117.1 197 56.3
Nitab4.5_0004548g0010 Nicotiana tabacum HOM05D000345 ORTHO05D000215 4.5e-21 105.9 195 53.3
MSTRG.16257 Avicennia marina HOM05D000345 ORTHO05D000215 2.2e-20 103.6 217 53.0
Thecc.06G147300 Theobroma cacao HOM05D000345 ORTHO05D000215 2.2e-20 103.6 150 46.7
CiPaw.09G121500 Carya illinoinensis HOM05D000345 ORTHO05D000215 4.9e-20 102.4 145 47.6
CiPaw.10G089900 Carya illinoinensis HOM05D000345 ORTHO05D000215 4.9e-20 102.4 145 47.6
Duzib235G0571 Durio zibethinus HOM05D000345 ORTHO05D000215 1.1e-19 101.3 150 47.3
Oeu042464.1 Olea europaea HOM05D000345 ORTHO05D000215 2.5e-19 100.1 197 50.3
Manes.17G072800 Manihot esculenta HOM05D000345 ORTHO05D000215 5.5e-19 99.0 153 44.4
CAN.G103.8 Capsicum annuum HOM05D000345 ORTHO05D000215 7.1e-19 98.6 204 49.5
Dinv21554 Davidia involucrata HOM05D000345 ORTHO05D000215 1.2e-18 97.8 145 49.0
COL.COLO4_31036 Corchorus olitorius HOM05D000345 ORTHO05D000215 1.6e-18 97.4 129 52.7
Manes.15G123800 Manihot esculenta HOM05D000345 ORTHO05D000215 2.1e-18 97.1 151 45.0
RcHm_v2.0_Chr5g0014491 Rosa chinensis HOM05D000345 ORTHO05D000215 2.1e-18 97.1 218 47.7
Sabra11G0066200 Salix brachista HOM05D000345 ORTHO05D000215 6.0e-18 95.5 147 44.2
Migut.M00891 Erythranthe guttata HOM05D000345 ORTHO05D000215 7.9e-18 95.1 212 50.0
Duzib160G0160 Durio zibethinus HOM05D000345 ORTHO05D000215 3.0e-17 93.2 150 44.7
Potri.004G065800 Populus trichocarpa HOM05D000345 ORTHO05D000215 5.1e-17 92.4 145 42.8
Haze_05631 Corylus avellana HOM05D000345 ORTHO05D000215 6.7e-17 92.0 136 46.3
Duzib192G0370 Durio zibethinus HOM05D000345 ORTHO05D000215 1.9e-16 90.5 150 43.3
Potri.011G083100 Populus trichocarpa HOM05D000345 ORTHO05D000215 1.9e-16 90.5 146 43.8
TWI53G0868 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 1.9e-16 90.5 133 48.9
TWI09G1307 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 5.7e-16 89.0 121 51.2
Sopen08g010620 Solanum pennellii HOM05D000345 ORTHO05D000215 7.4e-16 88.6 197 48.7
Solyc08g048390.3 Solanum lycopersicum HOM05D000345 ORTHO05D000215 2.8e-15 86.7 197 47.2
TWI73G0085 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 3.7e-15 86.3 120 50.8
Atru.chr10.1165 Acer truncatum HOM05D000345 ORTHO05D000215 8.2e-15 85.1 228 41.2
Gorai.009G153900 Gossypium raimondii HOM05D000345 ORTHO05D000215 1.1e-14 84.7 198 45.5
Gorai.011G046000 Gossypium raimondii HOM05D000345 ORTHO05D000215 1.4e-14 84.3 147 43.5
Nitab4.5_0000206g0010 Nicotiana tabacum HOM05D000345 ORTHO05D000215 1.4e-14 84.3 136 44.9
CSS0010058 Camellia sinensis var. sinensis HOM05D000345 ORTHO05D000215 1.8e-14 84.0 202 51.0
Gohir.A10G042460 Gossypium hirsutum HOM05D000345 ORTHO05D000215 3.1e-14 83.2 147 42.9
Sabra04G0043900 Salix brachista HOM05D000345 ORTHO05D000215 3.1e-14 83.2 135 44.4
Lalb_Chr07g0187601 Lupinus albus HOM05D000345 ORTHO05D000215 5.3e-14 82.4 141 39.0
CAN.G103.7 Capsicum annuum HOM05D000345 ORTHO05D000215 6.9e-14 82.0 205 46.3
FAN16G2080 Fragaria x ananassa HOM05D000345 ORTHO05D000215 1.2e-13 81.3 223 44.4
TAR626G0258 Trochodendron aralioides HOM05D000345 ORTHO05D000215 1.5e-13 80.9 137 43.8
Ciclev10014986m.g Citrus clementina HOM05D000345 ORTHO05D000215 2.6e-13 80.1 145 42.8
Sc05g0006050 Simmondsia chinensis HOM05D000345 ORTHO05D000215 3.4e-13 79.7 140 41.4
Hma1.2p1_0020F.1_g014230 Hydrangea macrophylla HOM05D000345 ORTHO05D000215 5.9e-13 79.0 148 41.2
Aqoxy4G00065 Aquilegia oxysepala HOM05D000345 ORTHO05D000215 5.0e-12 75.9 178 49.4
MD05G1281100 Malus domestica HOM05D000345 ORTHO05D000215 5.0e-12 75.9 147 42.2
Prupe.4G083500 Prunus persica HOM05D000345 ORTHO05D000215 5.0e-12 75.9 139 40.3
Gohir.A05G147300 Gossypium hirsutum HOM05D000345 ORTHO05D000215 6.5e-12 75.5 142 41.5
MD10G1259500 Malus domestica HOM05D000345 ORTHO05D000215 8.4e-12 75.1 148 39.9
Oeu034129.1 Olea europaea HOM05D000345 ORTHO05D000215 8.4e-12 75.1 144 39.6
Peaxi162Scf00317g00020 Petunia axillaris HOM05D000345 ORTHO05D000215 8.4e-12 75.1 144 40.3
Cpa.g.sc17.1 Carica papaya HOM05D000345 ORTHO05D000215 1.1e-11 74.7 93 53.8
Sed0012498 Sechium edule HOM05D000345 ORTHO05D000215 1.1e-11 74.7 185 51.4
Gohir.D05G149800 Gossypium hirsutum HOM05D000345 ORTHO05D000215 1.4e-11 74.3 139 40.3
Nn3g20413 Nelumbo nucifera HOM05D000345 ORTHO05D000215 1.9e-11 73.9 86 52.3
Nitab4.5_0006712g0010 Nicotiana tabacum HOM05D000345 ORTHO05D000215 5.5e-11 72.4 174 50.6
CSS0017338 Camellia sinensis var. sinensis HOM05D000345 ORTHO05D000215 4.6e-10 69.3 137 40.9
unitig_26.g9763 Utricularia gibba HOM05D000345 ORTHO05D000215 7.9e-10 68.6 178 38.8
FvH4_3g05220 Fragaria vesca HOM05D000345 ORTHO05D000215 1.0e-09 68.2 154 40.3
Actinidia01566 Actinidia chinensis HOM05D000345 ORTHO05D000215 1.3e-09 67.8 126 41.3
TAR624G0044 Trochodendron aralioides HOM05D000345 ORTHO05D000215 1.3e-09 67.8 149 36.9
MSTRG.13257 Avicennia marina HOM05D000345 ORTHO05D000215 3.0e-09 66.6 255 31.8
AUR62030149 Chenopodium quinoa HOM05D000345 ORTHO05D000215 1.1e-08 64.7 185 35.7
PGR083G2558 Punica granatum HOM05D000345 ORTHO05D000215 1.1e-08 64.7 131 43.5
TAR627G0300 Trochodendron aralioides HOM05D000345 ORTHO05D000215 1.1e-08 64.7 143 37.1
ClCG01G024760 Citrullus lanatus HOM05D000345 ORTHO05D000215 1.5e-08 64.3 139 38.8
DCAR_007880 Daucus carota HOM05D000345 ORTHO05D000215 1.5e-08 64.3 130 41.5
PGSC0003DMG400019904 Solanum tuberosum HOM05D000345 ORTHO05D000215 1.5e-08 64.3 195 39.0
MSTRG.7503 Avicennia marina HOM05D000345 ORTHO05D000215 1.9e-08 63.9 197 43.7
Dinv32229 Davidia involucrata HOM05D000345 ORTHO05D000215 3.3e-08 63.2 69 59.4
ClCG03G006640 Citrullus lanatus HOM05D000345 ORTHO05D000215 9.7e-08 61.6 124 38.7
FAN11G2780 Fragaria x ananassa HOM05D000345 ORTHO05D000215 9.7e-08 61.6 157 40.1
SGA_v2.0_scaffold223G42817 Striga asiatica HOM05D000345 ORTHO05D000215 9.7e-08 61.6 202 47.5
Ah.14g086330 Amaranthus hybridus HOM05D000345 ORTHO05D000215 1.3e-07 61.2 235 43.0
MELO3C007121.2 Cucumis melo HOM05D000345 ORTHO05D000215 1.3e-07 61.2 139 38.1
Lalb_Chr20g0117851 Lupinus albus HOM05D000345 ORTHO05D000215 1.3e-07 61.2 191 37.7
Lj1P1171T8 Lonicera japonica HOM05D000345 ORTHO05D000215 1.6e-07 60.8 181 45.3
MELO3C002754.2 Cucumis melo HOM05D000345 ORTHO05D000215 2.2e-07 60.5 204 45.6
CsaV3_1G004660 Cucumis sativus L. HOM05D000345 ORTHO05D000215 2.2e-07 60.5 204 45.6
CsaV3_6G051860 Cucumis sativus L. HOM05D000345 ORTHO05D000215 4.8e-07 59.3 139 37.4
Potri.012G109000 Populus trichocarpa HOM05D000345 ORTHO05D030513 4.8e-07 59.3 76 47.4
Sopen08g015840 Solanum pennellii HOM05D000345 ORTHO05D000215 6.3e-07 58.9 197 35.5
AUR62002694 Chenopodium quinoa HOM05D000345 ORTHO05D000215 8.2e-07 58.5 161 34.8
Rhsim13G0115800 Rhododendron simsii HOM05D000345 ORTHO05D000215 8.2e-07 58.5 137 39.4
Gohir.D10G043366 Gossypium hirsutum HOM05D000345 ORTHO05D000215 1.4e-06 57.8 84 46.4
Actinidia32342 Actinidia chinensis HOM05D000345 ORTHO05D000215 5.3e-06 55.8 190 44.2
GSVIVG01021528001 Vitis vinifera HOM05D000345 ORTHO05D000215 6.9e-06 55.5 182 30.2
Carub.0007s2288 Capsella rubella HOM05D000345 ORTHO05D000215 9.0e-06 55.1 191 39.3
vmacro03344 Vaccinium macrocarpon HOM05D000345 ORTHO05D000215 9.0e-06 55.1 135 37.8


User provided reference genes

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